Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60517g00020 ATGGAACAAAAACCGTGTGAGGAATCTGCGAAAAGCGTTTCGGACTTGAAGTGTGCGAAGAATCTTAACGAATCCGATGAGTCAATTGCGTGCCCTACACCAAATAAGACGGATGAGTTACCTTCCAAATCCAAGGAGCAACAAACTCAGCTTCCAGAAAAATATAGAGCCTTAGCTGATTTGTTTGGCCATATGAGTTGCTCACTTAGATTGCTGCACCTGCGTAAAAAGTCTCCAACTTTTCAAAATATTTGCGCCCAAGTGGAAATTCTTGCGCAGAGGAAATTTTCATATGCCCAACTTGCACAAATGAAGTATATACTTCCTGAGGGCATACATGTAGATAAGGTCCTTGTTCATGATAAGAAGAGCTTGTGTATGAAGGCAGACATGAAGATCACCTTGGTATTTGATGTTTTGGAAGAGGAATCTAATGAATCTTCTGATATGGCTTTTAGACAATATTTTAGTTCTAGGCTTATGAATTTTTCAAATATGCATCCTGAGGCGGCTGATATTCCAGAGGCTGTTCTGCCAGAGCCCTTTTGCCGAAGACCATGTAGCTTGATTGATGTGGATTTGCCTGTAAATTCTGCCAACGCTTCTTCGTCAACATCCAATCAAATTGAGTTGTTACCTGGGAAGTTCCATCCATTTCCATCTTTTACCCGACACTTTTCTCAGAACAATGTTGCTTGCCAGACCGAAAAGCTCCAGTGTATTTCATCAACTAAAACTTCCCTGTCATCCTGTGTATCTAATTACTTGGATAACCAAGAAAGTGAAAGCAAGTGCCAGGAAGGATATGCGCCTCCATCTGATTGTGCAACTAATATGAATAGTGGAGGACAGGGGAAGGAATCTATTTCTGACTTTCAACCTAATATTGCTAATACACCAGTGCATACTGCCCGTCCACCACGTGATGTTTGTGATAGTAGTTCTGAGAGCCCTGATATCAAAATTTCCTCTTCCTCAAATAGTTTGATGACAAAGACACCTGCACAATCAGCACCTGGGAGATTGATTCCCATTTCTGATGCCAAGCTTCAGAATATGGATACCAGAAAGTCAGCATCATGTCGCAAACCAGCAAAAAGAGTGCTTGACTTTCCGCTCATGGAAGGAAATGCCGGTTTTGACATCAAAGGAGACAACTTAGAACCTATCAGAGGTTCACACGAATATGATAGCATCCTTGAATCTGGTATTGGATATGCTGAGGATTGTAATTTACTGACCCAGAAGGTAGAAGAGAGGTCTGGTCACTCACGTGATAATACCCACCAAATTCACAGTGGTTTAGATACAAAGGATGAAAAATCATCTTCGTTGCTTGATCTGGTCAATGTGATTCACTCTATATTTCATTCTGTCAGAGGAGCTTCAATCACAAAAGAGGAGCTTTTGCATAAGATACTTATCAACAGTTTGGATGTTGATGAGATTAGTGAAGTTGAAGAACAAATCCATTTCATTGAAAAGTTGGTACCAGACTGGATCTGCAGAAAGTTGCTTCCTAGTGGAGATGATATCTATAGCATCAAGAAAGTGTCAGACTTGGACTCAGTTCAATCTAGGCTTCTTAAACACGTAACTCGGAGCTGA 1608 0.4092 MEQKPCEESAKSVSDLKCAKNLNESDESIACPTPNKTDELPSKSKEQQTQLPEKYRALADLFGHMSCSLRLLHLRKKSPTFQNICAQVEILAQRKFSYAQLAQMKYILPEGIHVDKVLVHDKKSLCMKADMKITLVFDVLEEESNESSDMAFRQYFSSRLMNFSNMHPEAADIPEAVLPEPFCRRPCSLIDVDLPVNSANASSSTSNQIELLPGKFHPFPSFTRHFSQNNVACQTEKLQCISSTKTSLSSCVSNYLDNQESESKCQEGYAPPSDCATNMNSGGQGKESISDFQPNIANTPVHTARPPRDVCDSSSESPDIKISSSSNSLMTKTPAQSAPGRLIPISDAKLQNMDTRKSASCRKPAKRVLDFPLMEGNAGFDIKGDNLEPIRGSHEYDSILESGIGYAEDCNLLTQKVEERSGHSRDNTHQIHSGLDTKDEKSSSLLDLVNVIHSIFHSVRGASITKEELLHKILINSLDVDEISEVEEQIHFIEKLVPDWICRKLLPSGDDIYSIKKVSDLDSVQSRLLKHVTRS 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60517g00020 535 MobiDBLite consensus disorder prediction 26 49 - -
Stsc60517g00020 535 SUPERFAMILY "Winged helix" DNA-binding domain 43 182 IPR036390 -
Stsc60517g00020 535 PANTHER DNA REPLICATION FACTOR CDT1 13 529 IPR045173 GO:0003677|GO:0030174|GO:0071163
Stsc60517g00020 535 MobiDBLite consensus disorder prediction 26 48 - -
Stsc60517g00020 535 Pfam DNA replication factor CDT1 like 51 137 IPR014939 -
Stsc60517g00020 535 MobiDBLite consensus disorder prediction 316 335 - -
Stsc60517g00020 535 MobiDBLite consensus disorder prediction 297 340 - -
Stsc60517g00020 535 Gene3D - 434 535 IPR038090 -
Stsc60517g00020 535 CDD Cdt1_m 42 182 IPR014939 -
Stsc60517g00020 535 SMART CDT1_2 51 180 IPR014939 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60517g00020 Stsc-Chr60517 80500 84209 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60517g00020 47 528 Core DNA Replication Machinery Family AT2G31270 29.216 1.74e-42 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60517g00020 K10727 - gmx:102670055 553.903