Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60517g00017 ATGGCTGAGTGGACCTATGATGTGTTCTTGAGTTTCAGGGGCAAAGATATTCGGCAACGCTTCATTGGCCATCTCTACAATGCTCTTCGCCGCAGGGGAATCCACACCTTCATTGATGACGTGGAAATCGAAAGAGGAGAAGACATCACACGCTCGCTTCTCACTGCAGTTGAGGAGTCCATGATTGCCATTCCCGTCTTCTCAGAAAACTATGCAACTTCAAGCTTCTGCTTGGATGAACTGGTTAACATCATGGAGTGTGCTAAGACTAAGGGCCAGATTGTGTTGCCGGTTTTCTATGACGTGGATCCTTCGGATGTGAGGAATCTGAGAGGGAGTTTTGGTGAAGCAATGATGAAACATGAGGAGAGGATGATAGTGATGATGGAAGATAAAGAGAGGTTCAAGAAATGGAAGATGGCTTTTAAGCAAGCAGCTTGTCTTTCTGGATTTCATTTTAAACTTGGGACTGAATCTGAATGTGAGTTTACTGAGAAGATTGTCAAAATAGTCTCCAAATGGGTTCAACACACATGTTTATATGTTTCAGATCAAGTAATTGGACTAGAATCTCATATTCGAGAACTGAACTTACTTTTGGAAGTTGAATCCATTGACAGAGTCCACATGGTAGGGATTCATGGCATTGGCGGAATAGGTAAAACAACTCTTGCTCGTGCTGTCTACAATTCAATTGCTGACTCATTTGAAGGTGTTTGTTTTCTTGGTAATGTGAGAGAAAATTCAACAACACATGGACTAGTTTATCTCCAACAAATGTTGCTTTCAAAGCTAGTTGGTGAGGGAGATGTCAAGTTTGGTGATGTCAGTGAAGGAAAGAAGGTAATCGAGCGTCGGCTCAACCGAAAGAAAGTTCTGTTGATTGTTGATGATGTTGATAGATTAGAGCAGTTAAAAGCAGTTGCAGGGGATTCGGTTTGGTTTGGTTCTGGTAGTAGAGTCATCGTCACGACTCGAAACAAAGGCTTGTTAAAGAGTCATGGAATTGTAAGAACATATGAAGTAGGGAAGTTAAATGATAAAGAAGCACTTGATTTGCTTAGATGGAATGTTTTTAAGACAAGGGAGGTTGATCCGAGTTACTCATACATTTTGAATAGAACAGTTGCTTTTGCTTCTGGCTTGCCACTTGCATTGGAAGTAATTGGTGCTAACTTGTTTGGTAAGGGAAAAGATGAGTGGGAATCTGCCTTGGATCAGTATAAAAGAAGTCCTAAGAGAGAAATTCAAGAGATTCTTAAGGTGAGCTTTGATGGATTGGAGGAGGAAGAGAAGAAGATCTTTCTTGACATTGCTTGTTTCTTTAATGGATATAGATCCAGGTATGTTGAGGAGATACTCCGTGCTCATCACGGGTTTTGCCCGAAGAACAGCATCCATGTGTTGATTGATAAGTCCTTGGTGAAGATTGAAGATGATAGAGTGGTGTTACATGATTTGATTCAAGATATGGGTAGAGAAATCGTTCGGCAAGAATCGATAGAGCCTCAAGAGCGTAGCAGGATTTGGAACTTCGAGGACGCAAAACGCGTTTTGGAACAAGACATTGGTAGCCATAAAATTGAAATTATCAAGCTAGCATTCCCCAAGGATGATGAAAAGGTTAATTGGGATGGTATGGCATTCAAGAAGATGAACAATCTCAAAACAATTATTATTAACAAAGGCGATTTTTCGGACATTCCCAAACATCTTCCAAATGGCTTGAAAAAGTTCATGAATTTGAGAGTTTTGAATGTTAGCAATTGCCAATTCTTAGAAGAAATACCTGATTTATCTGTTGCCCCACATTTAGAAGAATTATCATTCTGTTGGTGTCAAAATTTAACTGAAGTTCATGAATCAGTGGGTTTGCTAACTAAACTTAGAGTATTGGATGCAAAGTGTTGTGGCAAGCTTAGCAGTTTTCCAGACCTTATGCTACCTGCTCTCGAGAAACTCCGCCTTTCTTCTTGTTCAAGTCTTGAGAATTTTCCAGAAATATTAGGGAAGATGGAGAGTTTAACAAAACTCGAGTTAGAATACACTCCGATCAAAGAATTCCCGCCTTCGATTCGTTATATTACTAGGCTTGAAAGATTAGAATTGTGGCACTCTAAGATTGTTCTGGTGCCAAGTAGCATTTTTCTGATGAAAGAGCTCAAGTGCTTGAGAATTAGAAACTGTGATGGTTTGCAGTTACATGAACAAGAGAAAGTTGAAGAACAAATAAACTCAATTGTATTTTCAAATCATCAGCAACAGTTTGATTTCAGAAACTGTAATCTATCAAATGAGTTTCTTCAGAGTTGTGTCCCCTGGCTTGTCAATGTGAAAGAGTTGAATCTATCTTCCAACAGTTTCACAATTCTTCCTGCATGCATTGAAGGATGCACCTTCTTGAAGGTACTTATTTTGGATTATTGTGGAAATCTTCAAGAAGTTAGAGGGATTCCACCAAACATTGAAAAATTCTCTGCAAGAAAATGCACATCCTTAAAAAGTTTGGACCTCATGCTCCTTTCATGCACCAAAGATTGTAACTTTCTGAATGAACTCATTTTGGATGGTTGTGATAATCTTGAGGAAATAAGGGGGATTCCACCTAGCATAGAAGTCTTGCATGCTCCAAGCTACACATTGTTGTATTCCTCTTCAAGGAGCATGTTTTCTAACCAGGATTTACATGAGGATGTAAATGACAAGGAATCTTGGCTGCCAATGCCAGGAACAAATATTCAAGAGTGGTTCAATCATTCTCGCCACAGATCATCGATTTCTTTCTGGTTTCGGAACAAGTTTCCTGCCATATCACTCTTTGTGATTAATGAACTGAAGAAGACTTCATTTGAACCCAAATTGACCATCAATGGTCATGAAATGCATCTTTTCTCTTTATTCTCTCTACAAGAAGATCACATACTGATTCTGAATCTGGGTCCAAAGCAAACTGAATTCAAAGATGAGATAAACAATGTGATTTCTAAAGATGAATGGAATCATGTGGAGTTGTTTTCTGATCATGAAATGCATGGAGTAGGTGGAACTACATATGATGGCATCATGCAAATTGGACTCCATGTGTTCAAACAATTCAGTAACATGGAAGATATAAGATTCACTGCTCCGTTCTTGTTGGAAGAAGATCATAGCTTGGAGGGTATTGAAGATAATGAACCTTTGATGAATCAAGCTCTTCTAACTCAAGATGATCTTGATCTGGAGATGGAAGCATTTTATGCTTCCCTTGATGCTGAGACACATGATGTTCTTTCATCGAGTTTCGACAATGATCCAGCAACCACTGCTGCTCCCCCAAGTAAGGAGGCCAAAGAAGCATTGAAAACAGTACAAGACTTCATCACAAACAATGATGCTTCGGTGTTGTTGCGTGAAGAAAACTACAGTCTCATGAAGAACAGTTTGCATTACCTATCAAATTTGTCTTCAAAAGATGGCATATCAGGAGAAGTTGAAACTTTGGTATCAGAAGCTTCATGGTTGTTCAATTGTTGCAGTGTGAAATACATTGAATCATGCAGGGAAATTGAGTCTACAACATCAGAGCTACAAAGATTTGATGAATTAAAAGCAGGATTGGAAGGTAACAATAACAAGCACAAGGAGTTGAAGCAAAAGTTAGATTGGATGGAGAAAAGAAAGAAGGAGCTGGAAAAGGAAATGAATGCCATCAAAGCTAAGTTATGTGATTGTGAATCAAAAAAGAAGATTGTTGTTCAAGAAACAAGAGATATATTTAAAGAAGCAAAGACGCTTAGAGCTCAAAGAGATGAGTGGAGGGAAAAAGTGCCACAACTGCAGCATCAACAGAGTTTAGCAAAGACTAATCATGCAAAATTCACAGCTGAATGGTCAAAACTAGGAGAAAAATTTAACATTGTTCTAGACTGA 3912 0.3883 MAEWTYDVFLSFRGKDIRQRFIGHLYNALRRRGIHTFIDDVEIERGEDITRSLLTAVEESMIAIPVFSENYATSSFCLDELVNIMECAKTKGQIVLPVFYDVDPSDVRNLRGSFGEAMMKHEERMIVMMEDKERFKKWKMAFKQAACLSGFHFKLGTESECEFTEKIVKIVSKWVQHTCLYVSDQVIGLESHIRELNLLLEVESIDRVHMVGIHGIGGIGKTTLARAVYNSIADSFEGVCFLGNVRENSTTHGLVYLQQMLLSKLVGEGDVKFGDVSEGKKVIERRLNRKKVLLIVDDVDRLEQLKAVAGDSVWFGSGSRVIVTTRNKGLLKSHGIVRTYEVGKLNDKEALDLLRWNVFKTREVDPSYSYILNRTVAFASGLPLALEVIGANLFGKGKDEWESALDQYKRSPKREIQEILKVSFDGLEEEEKKIFLDIACFFNGYRSRYVEEILRAHHGFCPKNSIHVLIDKSLVKIEDDRVVLHDLIQDMGREIVRQESIEPQERSRIWNFEDAKRVLEQDIGSHKIEIIKLAFPKDDEKVNWDGMAFKKMNNLKTIIINKGDFSDIPKHLPNGLKKFMNLRVLNVSNCQFLEEIPDLSVAPHLEELSFCWCQNLTEVHESVGLLTKLRVLDAKCCGKLSSFPDLMLPALEKLRLSSCSSLENFPEILGKMESLTKLELEYTPIKEFPPSIRYITRLERLELWHSKIVLVPSSIFLMKELKCLRIRNCDGLQLHEQEKVEEQINSIVFSNHQQQFDFRNCNLSNEFLQSCVPWLVNVKELNLSSNSFTILPACIEGCTFLKVLILDYCGNLQEVRGIPPNIEKFSARKCTSLKSLDLMLLSCTKDCNFLNELILDGCDNLEEIRGIPPSIEVLHAPSYTLLYSSSRSMFSNQDLHEDVNDKESWLPMPGTNIQEWFNHSRHRSSISFWFRNKFPAISLFVINELKKTSFEPKLTINGHEMHLFSLFSLQEDHILILNLGPKQTEFKDEINNVISKDEWNHVELFSDHEMHGVGGTTYDGIMQIGLHVFKQFSNMEDIRFTAPFLLEEDHSLEGIEDNEPLMNQALLTQDDLDLEMEAFYASLDAETHDVLSSSFDNDPATTAAPPSKEAKEALKTVQDFITNNDASVLLREENYSLMKNSLHYLSNLSSKDGISGEVETLVSEASWLFNCCSVKYIESCREIESTTSELQRFDELKAGLEGNNNKHKELKQKLDWMEKRKKELEKEMNAIKAKLCDCESKKKIVVQETRDIFKEAKTLRAQRDEWREKVPQLQHQQSLAKTNHAKFTAEWSKLGEKFNIVLD 1303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60517g00017 1303 Gene3D - 173 337 IPR027417 -
Stsc60517g00017 1303 FunFam Disease resistance protein (TIR-NBS-LRR class) 2 177 - -
Stsc60517g00017 1303 Pfam NB-ARC domain 198 418 IPR002182 GO:0043531
Stsc60517g00017 1303 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 150 IPR035897 -
Stsc60517g00017 1303 Gene3D - 344 428 IPR042197 -
Stsc60517g00017 1303 SUPERFAMILY L domain-like 484 862 - -
Stsc60517g00017 1303 Coils Coil 1193 1234 - -
Stsc60517g00017 1303 SMART till_3 5 148 IPR000157 GO:0007165
Stsc60517g00017 1303 Gene3D - 1 172 IPR035897 -
Stsc60517g00017 1303 Gene3D Ribonuclease Inhibitor 508 660 IPR032675 -
Stsc60517g00017 1303 ProSiteProfiles TIR domain profile. 4 175 IPR000157 GO:0007165
Stsc60517g00017 1303 SMART AAA_5 207 355 IPR003593 GO:0016887
Stsc60517g00017 1303 Pfam TIR domain 6 178 IPR000157 GO:0007165
Stsc60517g00017 1303 PRINTS Disease resistance protein signature 646 662 - -
Stsc60517g00017 1303 PRINTS Disease resistance protein signature 210 225 - -
Stsc60517g00017 1303 PRINTS Disease resistance protein signature 286 300 - -
Stsc60517g00017 1303 PRINTS Disease resistance protein signature 379 393 - -
Stsc60517g00017 1303 Gene3D Ribonuclease Inhibitor 661 881 IPR032675 -
Stsc60517g00017 1303 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 6 749 IPR044974 GO:0006952
Stsc60517g00017 1303 Coils Coil 1256 1276 - -
Stsc60517g00017 1303 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 172 438 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60517g00017 Stsc-Chr60517 62802 68344 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60517g00017 6 733 WRKY Transcription Factor Family AT4G12020 29.367 1.65e-65 243