Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60517g00015 ATGTCTTCATCATCATCAAGCCCTCAAGTGATAACCTGCAAAGCTGCAGTGGCATGGGGATCAGGAGAGGCATTGGTGATGGAGGAAGTTCAAGTCAGTCCTCCCCATTCAATGGAGATTCGAATCAAAGTTGTCTCCACCTCTCTATGTCGCAGTGATCTTGCAGCCTGGGAATCTCATGCTATATTTCCTCGTATATTTGGTCATGAAGCATCAGGGATTGTTGAAAGTGTGGGGGAGGGAGTCACTGAATTCAAGGAGGGGGACCATGTGCTAACAGTCTTCATCGGAGAATGCAAGGCGTGCAGGCCATGCACATCCGGGAAAAGCAACATCTGTCAAGTTTTGGGATTGGAGAGAAAAGGTTTAATGCATAGCGATCAGACAACGCGCTTCTCTGTCAAAGGGAAGCCTGTATATCATTATTGTGCTGTTTCGAGTTTCAGTGAGTACACGGTAGTTCATTCCGGATGTGCAGTGAAAGTTAGCCCGCAGGTTCCTCTTGAGAAAGTGTGCCTTCTGAGCTGTGGAGTTGCTGCAGGTCTAGGTGCAGCATGGAATGTTGCCAATGTCACAGAAGGTTCAACAGTGGTGATATTTGGTCTCGGAACTGTTGGCCTTTCTGTTGCACAAGGTGCAAAATTGAGGGGCGCATCTCGAATAATTGGAGTAGACAACAATCCACAGAAGTGTGAAAAAGCAAAAGCTTTTGGGTTTACAGAAGTCGTTGACCCAAGTTCTTACCAAGAACCTATTGCTCAGGTTATTAAGCGCATTACCGACGGCGGAGCAGATTTTTCTTTTGAATGTGTAGGCAACACTGATGTGATAACCACTGCATTGCAGTCCTGTTGTGATGGATGGGGTTTGACAGTAACACTTGGTGTGCCGAAGGCGAAGCCTGAGATGTCAGCTCACTATGGACTATTGTTGATGGGAAGAACACTCAAAGGATCTCTATTTGGAGGATGGAAACCTAAATCTGATCTTCCCTTATTAGTAGAGAAGTATGTGAACAAGGAAATTCAAATTGATGACTACATAACACATAATTTGCCATTTGATGACATTAACAGAGCTTTTGATCTCATGAAGGAAGGGAAGTGTCTGCGTTGTGTTATTCACATGCCAAGATAA 1137 0.4494 MSSSSSSPQVITCKAAVAWGSGEALVMEEVQVSPPHSMEIRIKVVSTSLCRSDLAAWESHAIFPRIFGHEASGIVESVGEGVTEFKEGDHVLTVFIGECKACRPCTSGKSNICQVLGLERKGLMHSDQTTRFSVKGKPVYHYCAVSSFSEYTVVHSGCAVKVSPQVPLEKVCLLSCGVAAGLGAAWNVANVTEGSTVVIFGLGTVGLSVAQGAKLRGASRIIGVDNNPQKCEKAKAFGFTEVVDPSSYQEPIAQVIKRITDGGADFSFECVGNTDVITTALQSCCDGWGLTVTLGVPKAKPEMSAHYGLLLMGRTLKGSLFGGWKPKSDLPLLVEKYVNKEIQIDDYITHNLPFDDINRAFDLMKEGKCLRCVIHMPR 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60517g00015 378 Pfam Zinc-binding dehydrogenase 205 325 IPR013149 -
Stsc60517g00015 378 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 68 82 IPR002328 GO:0008270|GO:0016491
Stsc60517g00015 378 SUPERFAMILY GroES-like 8 186 IPR011032 -
Stsc60517g00015 378 SUPERFAMILY GroES-like 327 375 IPR011032 -
Stsc60517g00015 378 CDD alcohol_DH_plants 11 375 - -
Stsc60517g00015 378 Gene3D - 181 319 - -
Stsc60517g00015 378 Pfam Alcohol dehydrogenase GroES-like domain 39 161 IPR013154 -
Stsc60517g00015 378 PANTHER ALCOHOL DEHYDROGENASE 9 374 - -
Stsc60517g00015 378 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 166 340 IPR036291 -
Stsc60517g00015 378 FunFam Alcohol dehydrogenase 6 16 194 - -
Stsc60517g00015 378 Gene3D - 16 371 - -
Stsc60517g00015 378 FunFam S-(hydroxymethyl)glutathione dehydrogenase 181 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60517g00015 Stsc-Chr60517 51181 53947 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60517g00015 39 176 Monolignol Biosynthesis Gene Families AT4G37990 26.761 6.19e-11 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60517g00015 K00001 - gmx:100819938 698.738