Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60517g00014 ATGGTTGATGATTGTCAGGCAAGTTACAGAAGAAAGGACCATTTGACTCGTCACCTTCTACAGCATGAAGGAAGAACTTTTTCATGTCCAGTGGAAAATTGCAACCTAAGTTTCTCAATAAAAGGTAATTTGACAAGACATGTTAAGGAGATTCATGATGAGGTTTCTATGTCCACAAATATAGAGAGTAAGCAGTTTGTGTGCCCAGAAACTGGATGTGGAAAGGTCTTCAAGTTTGCATCAAAGCTTCAAAAGCATGAAGATTCTCATGTGAAGCTGCAGTCGGTAGATGTAGTGTGCTTGGAGCCTGGTTGTATGAAACACTTCTCTAATAACCAGTGTCTTAAAGAACACATTGAATCCTGCCATCAATATGTAGCTTGTGACATTTGTGGAAGTAGGCAACTGAAAAAGAATATTAAAAGGCACCTTCGCACACACGAAGCAAACAAATCGCTGGCAGAGTTTAAATGTGAATTTAAGGGCTGTAGCTGCAGATTCTCAAGTAAATCTAATCTTGTTACACATAAGAAGTGGTACATTCCTCATTTGAAAGGAATTTTGCTTTATGAATAA 576 0.3819 MVDDCQASYRRKDHLTRHLLQHEGRTFSCPVENCNLSFSIKGNLTRHVKEIHDEVSMSTNIESKQFVCPETGCGKVFKFASKLQKHEDSHVKLQSVDVVCLEPGCMKHFSNNQCLKEHIESCHQYVACDICGSRQLKKNIKRHLRTHEANKSLAEFKCEFKGCSCRFSSKSNLVTHKKWYIPHLKGILLYE 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60517g00014 191 SMART c2h2final6 27 52 IPR013087 -
Stsc60517g00014 191 SMART c2h2final6 156 183 IPR013087 -
Stsc60517g00014 191 SMART c2h2final6 98 123 IPR013087 -
Stsc60517g00014 191 SMART c2h2final6 126 147 IPR013087 -
Stsc60517g00014 191 SMART c2h2final6 1 22 IPR013087 -
Stsc60517g00014 191 SMART c2h2final6 66 90 IPR013087 -
Stsc60517g00014 191 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 95 IPR013087 -
Stsc60517g00014 191 ProSitePatterns Zinc finger C2H2 type domain signature. 29 52 IPR013087 -
Stsc60517g00014 191 ProSiteProfiles Zinc finger C2H2 type domain profile. 156 183 IPR013087 -
Stsc60517g00014 191 SUPERFAMILY beta-beta-alpha zinc fingers 138 180 IPR036236 -
Stsc60517g00014 191 Pfam Zinc finger, C2H2 type 27 52 IPR013087 -
Stsc60517g00014 191 Pfam Zinc finger, C2H2 type 66 90 IPR013087 -
Stsc60517g00014 191 PANTHER ZINC FINGER PROTEIN 2 178 - -
Stsc60517g00014 191 ProSitePatterns Zinc finger C2H2 type domain signature. 68 90 IPR013087 -
Stsc60517g00014 191 ProSitePatterns Zinc finger C2H2 type domain signature. 100 123 IPR013087 -
Stsc60517g00014 191 Gene3D Classic Zinc Finger 126 183 - -
Stsc60517g00014 191 SUPERFAMILY beta-beta-alpha zinc fingers 8 53 IPR036236 -
Stsc60517g00014 191 ProSiteProfiles Zinc finger C2H2 type domain profile. 27 52 IPR013087 -
Stsc60517g00014 191 SUPERFAMILY beta-beta-alpha zinc fingers 56 91 IPR036236 -
Stsc60517g00014 191 Gene3D Classic Zinc Finger 2 54 - -
Stsc60517g00014 191 Gene3D Classic Zinc Finger 55 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60517g00014 Stsc-Chr60517 47855 49119 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60517g00014 12 89 C2H2 Transcription Factor Family AT1G72050 34.146 2.22e-07 48.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc60517g00014 zf-C2H2 0.0024 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60517g00014 K09191 - gmx:100801812 278.87