Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60517g00010 ATGAGTCATGTTGCAAACTCTCAGTCTCAGTCTCAGCTCTATGATCAAGAACATGCAGTTCTTATGAAGATAAAACAGTACCTTCAAAACCCACCATTTTTAAGCCACTGGACACAGCAATCATCAGTTTCCAGTAATAGCCACTGTTCTTGGCCTGAGATAAACTGCACCAGTAGTGGCAATTCTGTCACTTCACTCACTCTCTCCAACTCCAACATCACACAAGCCATACCAACCTTCCTTTGTGAACTCAAGAACCTCACTTCTCTTGACTTCAGCTTCAACTTCATCCCTGGTGAGTTCCCAACTTCACTGTACAATTGTTCAAAGCTTCAGTACCTTGATCTTTCAATGAACAACTTTGTTGGCAAGATTCCTGATGATATGGCCACCTATTTATCTCAATTGAGGTACCTTAATCTTGGTTCTACCAATTTCACTGGTGATATTCCTTCTAGTATTGGAAGGTTAAGGGAACTAAGAGAGCTTAAGCTTCATTACTGTCTATTCAATGGAACAATTCCTGCTGAGATTGGAAACTTGTCTAATCTTGAGTACTTGGACTTGTCTTATAACACCATGTTCCCTAGTTGGAAATTGCCATCAAACTTCACACAATTGACCAAATTGAAGGTCTTTTATGTGTATGCAACAAACTTGGTTGGTGAAATTCCAGAGAACATTGGAGAAATGGTGGATTTGGAGAATTTGGATATGTCACAGAATGGTTTAACTGGTGGAATTCCCAGTGGCTTGTTCTTGCTGAAGAATCTGACCATCTTGTATCTTTTCCAGAACAGTCTCTCTGGAGAGATACCTAAGGTTGTTGAAGCATTGAATCTGGTTGAACTTGATCTTGCAGAGAATAACCTCACAGGGAAAATCCCAGAAGATCTTGGAAAGCTTAAGAACATTACTTGGTTGAATTTGTCACTTAATAAGTTGTCAGGGGAGATTCCAGAAGCCTTCGGTAGCCTTCCGGCTATGGTGGATTTTCGCGTGTTTGGCAACAATTTGTCAGGTACTCTTCCATCTGAATTCGGCCGCTACTCGAGGCTCGAAACCTTTCTGGTTTCTTCTAATAGGCTTACTGGAAATTTACCAGAGAATTTATGCTACAATGGCATGTTACTTAATTTAACTGTTTATGACAATAATCTTACTGGTGAGTTGCCAGAATCACTAGGAAATTGCAGTAGCCTACTTGATCTGAAAATTTACAACAATAAGTTTTCTGGTAACATTCCTAGTGGCCTTTGGACATCTTTCAATTTGTCAAATTTCATGGTGAGTCATAACAATTTCACTGGTGAGCTTCCTGAGAAGCTGTCCTCTAGCATTTCGCGGTTCGAGATAAGTTACAATCAATTTTCTGGTAGAATTCCAGCTAGTGTGTCTTCTTGGACTAATGTGGTAGTTTTTGATGCAAGCAAGAACAACTTGAATGGAAGCATTCCACAAGAGCTAACTTCTCTTCCAAAGTTAACAACCCTATTGCTTGATCAGAATCAGCTCACCGGGTCGCTTCCTTCGGATATAATCCACTGGGAGAATCTAGTGACTCTGAATTTGAGACAGAACAAGCTCTATGGACAAATACCAGATGCACTCTGCCGGTTACCGGTACTTAGTCAGCTTGACCTTTCAGAAAATCAACTCACTGGCCAAGTTCCTTCTCAGCTTCCAAGACTCACCAATCTCAATCTTTCTTCCAATCATTTGACAGGAAAGGTCCCGAATGAATTTGAAAATTCTGCATTTGATACCAGCTTTTTGGACAATCCTGGTCTTTGTTCTGATACCCCAGAATTGGACCTGGTTTTGTGTAATTCTACTCCACAAAGATCAAGCAAGGGTTCATCTTGGTCTGTTTCTTTGATCACAAGTCTTGCTGTAGCAGCCTTCTTACTGGCTTTGTTGGCAACACTCTTGATTATGAGGCTTCACAGAAAGAGAAAGCAAGAATTTGATAACTCATGGAAGCTAATTTCATTCCAAAGGCTGAGTTTCACAGAATCAGACATTCTCTCCTCACTAACTGAGCAAAACATTATTGGCAGTGGTGGATATGGTACAGTTTATCGTTGCGCTGTCAATGGTTTCGGCTATGTTGCTGTGAAAAAGATTTTGAATGACAGAAAGCTAGATCAGAAGCTCAAGAGCTCATTTCACGCAGAAGTTAATGTGCTGAGCAATATTCGCCATACCAACATTGTGAGGTTGTTGTGCTGCATTTCAAATGAGGAATCTATGCTCCTTGTTTACGAGTACATGGAAAATAGTAGCCTAGATAAGTGGCTGCACAAGAAGTATACTAAGCCCTCCAATTTCTCAAGTTCAGCAGTGCATCATGTTGTTCTTGATTGGCCAAAGAGGTTGCAGATAGCAATAGGAGTTGCACAAGAATATACTCAAACAACAAGGATCACTGAAAAGATTGATGTGTTTAGCTTTGGTGTTGTTCTATTGGAGCTGACAACTGGTAAAGAAGCCAATGATGGAGATCAACACTTGTCTCTCGCAGAGTGGGCGTGGCGCCACATTCAGATAGGAAGCAACATAGAAGAGCTTCTAGACAAAGATGTGATGGAACCAAGCTACTTGGATGAAATGTGCACAGTTTTCAAACTTGGAGTGATGTGTACTGCAACATTGCCTTCTACTAGGCCTTCCATGAAGGAGGTCCTGCAAATGTTGCAACTCTGCAGAGATCAATTTGCTTATGGTTATGGAGGAGGAGAAAGGAAATTAGGCCATTATGATGTTGTTCCTCTTCTTAAGGGTCCTAAAAGTGAAACAAGGTTGGATATTGTTGATACTTTATAA 2826 0.4069 MSHVANSQSQSQLYDQEHAVLMKIKQYLQNPPFLSHWTQQSSVSSNSHCSWPEINCTSSGNSVTSLTLSNSNITQAIPTFLCELKNLTSLDFSFNFIPGEFPTSLYNCSKLQYLDLSMNNFVGKIPDDMATYLSQLRYLNLGSTNFTGDIPSSIGRLRELRELKLHYCLFNGTIPAEIGNLSNLEYLDLSYNTMFPSWKLPSNFTQLTKLKVFYVYATNLVGEIPENIGEMVDLENLDMSQNGLTGGIPSGLFLLKNLTILYLFQNSLSGEIPKVVEALNLVELDLAENNLTGKIPEDLGKLKNITWLNLSLNKLSGEIPEAFGSLPAMVDFRVFGNNLSGTLPSEFGRYSRLETFLVSSNRLTGNLPENLCYNGMLLNLTVYDNNLTGELPESLGNCSSLLDLKIYNNKFSGNIPSGLWTSFNLSNFMVSHNNFTGELPEKLSSSISRFEISYNQFSGRIPASVSSWTNVVVFDASKNNLNGSIPQELTSLPKLTTLLLDQNQLTGSLPSDIIHWENLVTLNLRQNKLYGQIPDALCRLPVLSQLDLSENQLTGQVPSQLPRLTNLNLSSNHLTGKVPNEFENSAFDTSFLDNPGLCSDTPELDLVLCNSTPQRSSKGSSWSVSLITSLAVAAFLLALLATLLIMRLHRKRKQEFDNSWKLISFQRLSFTESDILSSLTEQNIIGSGGYGTVYRCAVNGFGYVAVKKILNDRKLDQKLKSSFHAEVNVLSNIRHTNIVRLLCCISNEESMLLVYEYMENSSLDKWLHKKYTKPSNFSSSAVHHVVLDWPKRLQIAIGVAQEYTQTTRITEKIDVFSFGVVLLELTTGKEANDGDQHLSLAEWAWRHIQIGSNIEELLDKDVMEPSYLDEMCTVFKLGVMCTATLPSTRPSMKEVLQMLQLCRDQFAYGYGGGERKLGHYDVVPLLKGPKSETRLDIVDTL 941
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60517g00010 941 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 177 277 - -
Stsc60517g00010 941 SMART serkin_6 679 901 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60517g00010 941 ProSitePatterns Protein kinases ATP-binding region signature. 685 708 IPR017441 GO:0005524
Stsc60517g00010 941 Pfam Leucine Rich Repeat 563 584 IPR001611 GO:0005515
Stsc60517g00010 941 Gene3D Transferase(Phosphotransferase) domain 1 666 801 - -
Stsc60517g00010 941 SMART LRR_typ_2 231 255 IPR003591 -
Stsc60517g00010 941 SMART LRR_typ_2 492 516 IPR003591 -
Stsc60517g00010 941 SMART LRR_typ_2 181 207 IPR003591 -
Stsc60517g00010 941 SMART LRR_typ_2 133 157 IPR003591 -
Stsc60517g00010 941 SMART LRR_typ_2 84 108 IPR003591 -
Stsc60517g00010 941 SMART LRR_typ_2 561 584 IPR003591 -
Stsc60517g00010 941 SMART LRR_typ_2 302 325 IPR003591 -
Stsc60517g00010 941 PANTHER UNNAMED PRODUCT 200 833 - -
Stsc60517g00010 941 Gene3D Transferase(Phosphotransferase) domain 1 802 909 - -
Stsc60517g00010 941 FunFam Receptor-like protein kinase HSL1 isoform A 285 609 - -
Stsc60517g00010 941 Gene3D Ribonuclease Inhibitor 278 373 IPR032675 -
Stsc60517g00010 941 Gene3D Ribonuclease Inhibitor 175 277 IPR032675 -
Stsc60517g00010 941 Pfam Leucine rich repeat 62 121 IPR001611 GO:0005515
Stsc60517g00010 941 Pfam Leucine rich repeat 280 339 IPR001611 GO:0005515
Stsc60517g00010 941 ProSiteProfiles Protein kinase domain profile. 679 941 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60517g00010 941 SUPERFAMILY L domain-like 45 365 - -
Stsc60517g00010 941 Gene3D Ribonuclease Inhibitor 14 174 IPR032675 -
Stsc60517g00010 941 FunFam Receptor-like protein kinase HSL1 isoform A 14 172 - -
Stsc60517g00010 941 Gene3D Ribonuclease Inhibitor 446 513 IPR032675 -
Stsc60517g00010 941 Gene3D Ribonuclease Inhibitor 374 445 IPR032675 -
Stsc60517g00010 941 FunFam Receptor-like protein kinase HSL1 659 757 - -
Stsc60517g00010 941 Gene3D Ribonuclease Inhibitor 514 605 IPR032675 -
Stsc60517g00010 941 PRINTS Leucine-rich repeat signature 561 574 - -
Stsc60517g00010 941 PRINTS Leucine-rich repeat signature 543 556 - -
Stsc60517g00010 941 Pfam Protein kinase domain 681 774 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60517g00010 941 SUPERFAMILY Protein kinase-like (PK-like) 676 904 IPR011009 -
Stsc60517g00010 941 SMART LRR_sd22_2 255 281 - -
Stsc60517g00010 941 SMART LRR_sd22_2 181 206 - -
Stsc60517g00010 941 SMART LRR_sd22_2 84 116 - -
Stsc60517g00010 941 Pfam Leucine rich repeat N-terminal domain 16 56 IPR013210 -
Stsc60517g00010 941 SUPERFAMILY RNI-like 280 581 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60517g00010 Stsc-Chr60517 37888 40980 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60517g00010 11 900 Receptor kinase-like Gene Family AT5G25930 46.751 0.0 808
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc60517g00010 Pkinase 1.7e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60517g00010 - - ahf:112801804 1420.22