Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60517g00004 ATGGTGTTCTGCAGTGATCAAATTTTTTATCCACAAGAAAGAGATGCTTTGTTGTTCATAAGGGATTCTCTGAATTCTTCCATTGATTTGCATGGGAATTGGGTTGGTCCACCATGCACAGAAGCAAATCAAAGCAAATGGATTGGCATCACTTGTTCTAATTTTCATGTTGTTCACATTGTTCTTGAAGGGATCAACCTTAGTGGAACTTTGAATAATAATCCTACATTCCTTCAAAACATCACTCTCTTGAAGAAACTCAGCTTCAGAAACAATTTGCTTCTTGGGATGCTACCAAATCTCACAAGTTTGGTGTCTTTGGAAGAAGTGATTTTCTCAGATAATCACTTCTCAGGGAAAATCCCTTTTGGGTATGTTGATCTTCCTAGCCTAAGAGTTTTGGAGCTGCAAGAGAATTACTTGACTGGTCAAATTCCACCCTTTGATCAACCATCATTGGAAAGTTTCAATCTTTCATATAATCACTTGGTGGGTCCTATTCCTCAGACTCATGTGATTCAAAGTTTTCCAGTGAGTTCCTTTGAAAATAACACTGATCTTTGTGGAAAGCCATTGGATAAGCTATGTCCTGATGAACCTTCTCCTGCTCCATCTCCTGTGCCAGCAGTTAGAAAAAATAAGAGACTCAAAGTTTGGATTATTGCTTTGATTGCTTCCTCTTCTGCACTGTTTCTGTTTCTGATCATCATTGCTTTGCTTTTGTTTTGTAAAAGAAGGGCTAGTGGAGAAGAAACAATTAGAAGAAAAGATTCAAAAGATTCAGCAGGGTATGTATTTGGAGCATGGGCGAAGAAAATGGTGTCTCAATCCTTCAGTGAAGATTCTGAAAGATTAGGAAGATTGGAATTTTCCAACAAAAAGTTTCCAGTGTTTGACTTAGATGATTTGTTAAGGGCATCGGCAGAAGTTCTAGGGAGAGGCAAATTGGGCATTACATACAAAGCATCACTTGAAAATGGTGCTCTTGTTGCTGTGAAGAGACTTAGCTGCATGAATGAATTGAGCAAGAAGGAATTTCTTCAGCAGATGCAATTGCTTGGGAGAATGAAGCATGAAAATCTTGTAGAGATTGTGTCTTTCTATTATTCTGAGGAGCAAAAGCTAATCATTTATGAGTTCATGTCTGATGGAACTTTGTTTGAGCTCTTACATGACAAGAAATCACGGAAGGTCCCTCATGCAAACCTCAAATCAACCAATGTCCTAATCCAGCAAGATAGCCAAGGATCCTATTCCAATTCCAAGCTCACAGATTATGGATTCTTTCCACTCCTAACCACCTCAAGGAAAAACCATGGTGATAAACTAGCCATAAGCAGGTCAACAGAGTTTGTCAAAGGGAATAAGAAGCTAACACACAAGACAGATGTTTATTGCTTTGGTATCATCATGCTTGAGATCATAACTGGGAAGATTCCTGGGCAAGTAACTAGTGGTGCTGAGATTGAAGTAAGTGATCTTTCAAATTGGGTGAGAACTGTGGTGAACAATGATTGGTCCACAGATATATTGGATTTAGAGATATTAGCAGAAAAAGAAGGGCATGATGCAATGTTGAATTTGACTGAGTTAGCATTAGAATGCACTGATGTTACACCACAGAATAGGCCTAACATGAGTCAAGTGTTAATGAGAATACAAGAGATAGAGCTAAATCAGAAGAGACAATAA 1692 0.3842 MVFCSDQIFYPQERDALLFIRDSLNSSIDLHGNWVGPPCTEANQSKWIGITCSNFHVVHIVLEGINLSGTLNNNPTFLQNITLLKKLSFRNNLLLGMLPNLTSLVSLEEVIFSDNHFSGKIPFGYVDLPSLRVLELQENYLTGQIPPFDQPSLESFNLSYNHLVGPIPQTHVIQSFPVSSFENNTDLCGKPLDKLCPDEPSPAPSPVPAVRKNKRLKVWIIALIASSSALFLFLIIIALLLFCKRRASGEETIRRKDSKDSAGYVFGAWAKKMVSQSFSEDSERLGRLEFSNKKFPVFDLDDLLRASAEVLGRGKLGITYKASLENGALVAVKRLSCMNELSKKEFLQQMQLLGRMKHENLVEIVSFYYSEEQKLIIYEFMSDGTLFELLHDKKSRKVPHANLKSTNVLIQQDSQGSYSNSKLTDYGFFPLLTTSRKNHGDKLAISRSTEFVKGNKKLTHKTDVYCFGIIMLEIITGKIPGQVTSGAEIEVSDLSNWVRTVVNNDWSTDILDLEILAEKEGHDAMLNLTELALECTDVTPQNRPNMSQVLMRIQEIELNQKRQ 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60517g00004 563 FunFam Leucine-rich repeat receptor-like protein kinase 106 198 - -
Stsc60517g00004 563 SUPERFAMILY L domain-like 11 174 - -
Stsc60517g00004 563 Gene3D Phosphorylase Kinase; domain 1 270 375 - -
Stsc60517g00004 563 Gene3D Transferase(Phosphotransferase) domain 1 376 563 - -
Stsc60517g00004 563 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 9 559 IPR046959 -
Stsc60517g00004 563 SUPERFAMILY Protein kinase-like (PK-like) 308 556 IPR011009 -
Stsc60517g00004 563 ProSiteProfiles Protein kinase domain profile. 305 558 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60517g00004 563 Gene3D Ribonuclease Inhibitor 10 198 IPR032675 -
Stsc60517g00004 563 Pfam Protein kinase domain 395 550 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60517g00004 563 Pfam Protein kinase domain 308 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60517g00004 Stsc-Chr60517 11975 14940 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60517g00004 40 557 Receptor kinase-like Gene Family AT1G68400 32.512 1.67e-85 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Stsc60517g00004 Pkinase 1.3e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60517g00004 - - aip:107641436 915.99