Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60517g00003 ATGAGGGCTACCTTAGCTGAATTTGCATCCACTTTCATCTTTGTCTTTGCTGGAGAAGGCACAGGCCTTGCTCTTGATAGGATATACAAGGATGCAGCATTCTCAGCTGGAGAACTGTTGGCACTAGCACTTGCACATGCATTTGCACTATTTGCGGCGGTTTCGGCCAGCATGCATGTCTCAGGTGGCCATGTCAACCCGGCGGTGACATTCGGAGCTCTTATCGGCGGTAGGATCTCCGTTGTCCGTGCCATATACTACTGGGTTGCTCAACTTCTAGGCTCTATAGTGGCTTCCCTCTTGTTGAGGCTTGTCACTAACAACATGAGACCAGGAGGGTTCCATGTGACAACAGGGCTTGGAGCAGGGCATGGGCTGATACTTGAGATAGTGATGACATTTGGGCTTATGTACATAGTATATGCCACTGCTATTGATCCCAAAAGGGGCTCAATTGGGGCCATTGCACCTTTAGCAATTGGGCTCATTGTTGGAGCAAACATCCTTGTTGGAGGCCCATTTGATGGGGCATGCATGAACCCAGCACTTGCATTTGGGCCTTCCTTGGTAGGCTGGAGATGGCACTACCACTGGATCTACTGGGTTGGCCCATTCATTGGTGCAGCCATTGCAGCAATCATATATGAATACATCATCATCCCAGTTGAGCCTCCTCATACTCATCAACCTTTGGCTCCTGAAGATTACTAG 711 0.4937 MRATLAEFASTFIFVFAGEGTGLALDRIYKDAAFSAGELLALALAHAFALFAAVSASMHVSGGHVNPAVTFGALIGGRISVVRAIYYWVAQLLGSIVASLLLRLVTNNMRPGGFHVTTGLGAGHGLILEIVMTFGLMYIVYATAIDPKRGSIGAIAPLAIGLIVGANILVGGPFDGACMNPALAFGPSLVGWRWHYHWIYWVGPFIGAAIAAIIYEYIIIPVEPPHTHQPLAPEDY 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60517g00003 236 Gene3D Glycerol uptake facilitator protein. 1 224 IPR023271 -
Stsc60517g00003 236 FunFam Probable aquaporin TIP1-1 1 234 - -
Stsc60517g00003 236 Pfam Major intrinsic protein 1 215 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc60517g00003 236 NCBIfam MIP family channel protein 6 215 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc60517g00003 236 SUPERFAMILY Aquaporin-like 1 226 IPR023271 -
Stsc60517g00003 236 CDD MIP 2 205 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc60517g00003 236 PRINTS Major intrinsic protein family signature 128 146 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc60517g00003 236 PRINTS Major intrinsic protein family signature 46 70 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc60517g00003 236 PRINTS Major intrinsic protein family signature 83 102 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc60517g00003 236 PRINTS Major intrinsic protein family signature 2 21 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc60517g00003 236 PRINTS Major intrinsic protein family signature 198 218 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc60517g00003 236 PRINTS Major intrinsic protein family signature 161 183 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc60517g00003 236 PANTHER AQUAPORIN-8 1 229 IPR034294 -
Stsc60517g00003 236 ProSitePatterns MIP family signature. 64 72 IPR022357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60517g00003 Stsc-Chr60517 9127 10650 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60517g00003 1 236 Major Intrinsic Protein MIP AT1G17810 73.878 1.08e-114 327
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60517g00003 K09873 - gmx:100817450 372.474