Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60516g00007 ATGAAGACCCGTTTATCAAAATGGGTTATTTCCGTCGCGGTTACTTTCTTCTGCTTCCTCGCATGCTTCGAAATCCAAGCCAAAACCATCGACCCTTACAAGGTTCTTGGGGTTGATAAGAATGCAAGTCAGAGGGAAATTCAGAAGGCTTTCCACAAGCTCTCTCTTCAGTATCACCCTGACAAGAACAAAGCCAAGGGTGCACAAGAGAAGTTTGCTCAGATTAACAATGCGTACGAGATTTTATCAGATGAGCAGAAAAGGAAGAATTATGACATGTATGGAGATGAAAGAGGACAGCCTGGATTTGAAGCTGGGCAGCCTGGGGGTCAAGGTGGATATTCTTATTTCACAGGTGGTGGACCGGGACAAAGCCAGTTCAACTTTAGACCCGGGGACTGGCAGGGTATGGGTGGGCAAGGAGGAGGATCCAAGTCATTCTCCTTTTCCTTTGGTGGGCCTGGTGGGTCTGGTGGATCTGGTGGTTCTTTTGGATTTGATTTGAATGATATTTTTGGTAGTTTTTTTGGTGGCGGCGGAGGAGGAGGTGGTGGGAGTCAGTTTGGGGGTTTTGGCAGCGGTTCAACCAGTTCTCAGTCTGGAGGTTTTGGTAGTTCAACTGGTTCTCAATCTACGTCCAAGAAATCGTCTAAAAGCATTAAAGTCATAAATTCACGAGTATATGAGAAAGAAATATTTGATCAGGGGATGACATGGATTTTGTTAGCTTATATGCCGTCATTGAAGGGGATCCAACACTTCGAATCTGTTGCTGAGGAGACTTCTAGTTCGTTGCAAGGGGCATTGAAGGTTGGAAGTATTAATTGTGAAAAGGAAGCATCATTCTGTAAGGAGATTGGTGTGAATCCGCGCAGATCTCCACGGCTTTTTGTTTATTCTTACAAGGAGAATGAAAAGGGTTCTTTGGTCGAGTATACGGGTGACTTGTCTGTCAAGGATTTTAAGGCTTTTTGTCAAGAACACTTGCCTAGGTTTTCCAGACGGATTGACTTGAAATCGTTTGATCAATTAAGTGCTACTGGAAAGTTGCCTAGGGTGATGCTTCTTTCAACCAAAAAAGACACTCCTGTAATCTGGCGTGTGCTTAGTGGCTTGTATCATAAACGTTTCGCTTTCAATGATATACAGGTTCAAGATGTTTCTGATCCAAGAGTGAAAAAGTTAGGAGTTGACGGACTTCCAGCTATCATAGGTTGGCTACCTAACGGAGAGAAACGCGTCTTGAAATCAGGGATTTCTGTAAAAGATTTGAAATCTGCAGTTGTTGATCTCAGTAGTCTACTTGACAGTTTTGAAAAATTATGTAAAAAGGAAGGATCTGGTCATGCTAGGAAGACGGAAACTGATTCTGGAGAGGGACACATACAGCTGCTTTCTAAGTCTAACTTCGAGGAGCTATGCGGTGATAAAGCTCCAGTATGCATCATTGGTGCATTCAGATCTTCTAAAGCCAGAGAAAAGCTAGAGTCCATTCTCTCTTATGTCTCCCAAATATCACTTTCAAGGCGACCAAGTCAAGGAGCCAGCTCTAGGGATTCAATCTCCTACTCTCTCTTAGATGCTGCTAAGCAAGAATCATTTCTAAAGGCATTCAACAAGACAGATATCAAGTCATCAGATAAATTGTTGATCGCCTACAAGCCTAGGAGAGGTAAATATGCTGTATTCATGGGTGATATGACAATGGAGGAGGTTGAGACTTTTATCAGCTCAGTCCTCAGTGGAGATATACCCTTCAGGGAAACACAAAATAAGCCTGTACTCAAGTAG 1791 0.4316 MKTRLSKWVISVAVTFFCFLACFEIQAKTIDPYKVLGVDKNASQREIQKAFHKLSLQYHPDKNKAKGAQEKFAQINNAYEILSDEQKRKNYDMYGDERGQPGFEAGQPGGQGGYSYFTGGGPGQSQFNFRPGDWQGMGGQGGGSKSFSFSFGGPGGSGGSGGSFGFDLNDIFGSFFGGGGGGGGGSQFGGFGSGSTSSQSGGFGSSTGSQSTSKKSSKSIKVINSRVYEKEIFDQGMTWILLAYMPSLKGIQHFESVAEETSSSLQGALKVGSINCEKEASFCKEIGVNPRRSPRLFVYSYKENEKGSLVEYTGDLSVKDFKAFCQEHLPRFSRRIDLKSFDQLSATGKLPRVMLLSTKKDTPVIWRVLSGLYHKRFAFNDIQVQDVSDPRVKKLGVDGLPAIIGWLPNGEKRVLKSGISVKDLKSAVVDLSSLLDSFEKLCKKEGSGHARKTETDSGEGHIQLLSKSNFEELCGDKAPVCIIGAFRSSKAREKLESILSYVSQISLSRRPSQGASSRDSISYSLLDAAKQESFLKAFNKTDIKSSDKLLIAYKPRRGKYAVFMGDMTMEEVETFISSVLSGDIPFRETQNKPVLK 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60516g00007 596 Coils Coil 65 85 - -
Stsc60516g00007 596 SUPERFAMILY Thioredoxin-like 217 330 IPR036249 -
Stsc60516g00007 596 PANTHER DNAJ PROTEIN ERDJ3A 1 596 - -
Stsc60516g00007 596 PRINTS DnaJ domain signature 51 66 IPR001623 -
Stsc60516g00007 596 PRINTS DnaJ domain signature 33 51 IPR001623 -
Stsc60516g00007 596 PRINTS DnaJ domain signature 67 87 IPR001623 -
Stsc60516g00007 596 PRINTS DnaJ domain signature 87 106 IPR001623 -
Stsc60516g00007 596 CDD PDI_a_family 253 324 - -
Stsc60516g00007 596 SMART dnaj_3 30 87 IPR001623 -
Stsc60516g00007 596 MobiDBLite consensus disorder prediction 186 215 - -
Stsc60516g00007 596 SUPERFAMILY Chaperone J-domain 19 99 IPR036869 -
Stsc60516g00007 596 MobiDBLite consensus disorder prediction 189 215 - -
Stsc60516g00007 596 Gene3D Glutaredoxin 206 328 - -
Stsc60516g00007 596 Pfam DnaJ domain 31 92 IPR001623 -
Stsc60516g00007 596 Gene3D DnaJ domain 28 188 IPR036869 -
Stsc60516g00007 596 CDD DnaJ 31 84 IPR001623 -
Stsc60516g00007 596 ProSitePatterns Nt-dnaJ domain signature. 72 91 IPR018253 -
Stsc60516g00007 596 ProSiteProfiles dnaJ domain profile. 31 95 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60516g00007 Stsc-Chr60516 82625 86427 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60516g00007 33 94 C2H2 Transcription Factor Family AT1G74250 42.647 2.68e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60516g00007 - - adu:107484989 903.664