Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Stsc60515g00019 | ATGAATGACCTATTCTCAAGTTCCTTCAAGAAATACACTGATGTGGCGCCACAGACCGACTACGCAAACGATGTAGAGGCCGGCAAGGAAACTATCAATCTTGACAAGTTCTTCGAAGATGTGGAGAATGTCAAGGAAGAAATGAGAACGATTGAGAAGCTCTACAGAAAGTTGCAAGAGGCCAATGAAGAGAGCAAGATTGTCCACAATGCTAAGACCATGAAGGATCTTCGTTCGAGGATGGACCAAGATGTCTCTCAGGTCCTGAAACGTGTGAAGATGATCAAGGGTAAGCTGGAAGCTCTAGAAAAATCGAATGCAGAAAACAGAAAGCTTCCGGGGTGCGGTCCAGGCTCCTCAGCCGACAGGACAAGGTCTTCGGTTGTTAGTGGCTTGGGGAAGAAGCTAAAGGACTTGATGGATGACTTTCAAGGATTGAGGGCGAGGATGCAAGCTGAGTACAAGGAGACAGTGGAGCGAAGGTATTTCACAATCACTGGGGAGAAGGCAGATGAAGATACAATAGAGAATTTGATAGCCAGCGGGGAGAGTGAGAGTTTCATGCAGAAAGCAATTCAAGAACAGGGGAGGGGTCAGATTATGGACACTATATCTGAAATTCAGGAGAGACATGATGCTGTGAAGGAGATAGAGAAGAACCTTCTTGAGCTGCACCAGGTTTTCTTGGACATGGCAGCTTTGGTGGAGTCTCAGGGACAACAGCTCAACAACATAGAGAGCCATGTTGCTCATGCGAGTTCCTTCGTGCGCCGCGGCACGGAGCAGCTTCAGGAGGCTAGAGATATTCAGAAGGACTCCAGGAAGTGGTACTGCTATGCTGTCATTCTCGTCATCGTCCTCATCATTGTGCTCCTCTTCCCTATATTGATGAACATAGCGCCTCACTTGTTTTAA | 915 | 0.4732 | MNDLFSSSFKKYTDVAPQTDYANDVEAGKETINLDKFFEDVENVKEEMRTIEKLYRKLQEANEESKIVHNAKTMKDLRSRMDQDVSQVLKRVKMIKGKLEALEKSNAENRKLPGCGPGSSADRTRSSVVSGLGKKLKDLMDDFQGLRARMQAEYKETVERRYFTITGEKADEDTIENLIASGESESFMQKAIQEQGRGQIMDTISEIQERHDAVKEIEKNLLELHQVFLDMAALVESQGQQLNNIESHVAHASSFVRRGTEQLQEARDIQKDSRKWYCYAVILVIVLIIVLLFPILMNIAPHLF | 304 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Stsc60515g00019 | 304 | FunFam | Syntaxin 132 | 197 | 297 | - | - | |
| Stsc60515g00019 | 304 | CDD | SNARE_syntaxin1-like | 203 | 265 | - | - | |
| Stsc60515g00019 | 304 | SMART | tSNARE_6 | 199 | 266 | IPR000727 | - | |
| Stsc60515g00019 | 304 | ProSitePatterns | Syntaxin / epimorphin family signature. | 210 | 249 | IPR006012 | GO:0005484|GO:0006886|GO:0016020 | |
| Stsc60515g00019 | 304 | PANTHER | SYNTAXIN | 42 | 288 | IPR045242 | - | |
| Stsc60515g00019 | 304 | MobiDBLite | consensus disorder prediction | 106 | 127 | - | - | |
| Stsc60515g00019 | 304 | Gene3D | - | 34 | 161 | - | - | |
| Stsc60515g00019 | 304 | FunFam | Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group | 31 | 161 | - | - | |
| Stsc60515g00019 | 304 | Pfam | Syntaxin | 36 | 239 | IPR006011 | GO:0016020 | |
| Stsc60515g00019 | 304 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 204 | 266 | IPR000727 | - | |
| Stsc60515g00019 | 304 | Pfam | SNARE domain | 241 | 292 | IPR000727 | - | |
| Stsc60515g00019 | 304 | SUPERFAMILY | t-snare proteins | 33 | 259 | IPR010989 | GO:0016020|GO:0016192 | |
| Stsc60515g00019 | 304 | CDD | SynN | 34 | 191 | IPR006011 | GO:0016020 | |
| Stsc60515g00019 | 304 | SMART | SynN_4 | 29 | 155 | IPR006011 | GO:0016020 | |
| Stsc60515g00019 | 304 | Coils | Coil | 34 | 71 | - | - | |
| Stsc60515g00019 | 304 | Gene3D | - | 193 | 297 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Stsc60515g00019 | Stsc-Chr60515 | 97571 | 98485 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Stsc60515g00019 | 1 | 304 | SNARE and Associated Proteins | AT1G61290 | 76.316 | 1.28e-174 | 483 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Stsc60515g00019 | K08486 | - | gmx:100818999 | 508.834 |