Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60515g00018 ATGGCTTCTTCTGCTGCTTCCGTTTCTTCTTCTTGCTTGCCACACTCCAGGTTCTGCTACAACCCTCACTGCAAAGGATTGAAGTCCCAAATACCCAAGAAAGGTTGGAAACTCCGTTCCGGAGACCGAGCCGAACTTTGTGATCGATGCGGCTCTGCTTTTGAAGAAGGAAGATTTTGTGAGACTTTTCACTTGAATGCTTCTGGTTGGAGGAACTGTGAGACCTGTAGGAAGCGGATTCACTGTGGATGCATCGTCTCATATGACACCTTTACGCTGTTGGATCCTGGTGGAGTTGAATGCCATGGATGTGCAAAGTCTTTTCACGTTGAAGCTTATTTCAAGGACAGAATTAGAAAATTTTCTGAGCATGATCATAATCGGAATCAGTTAGCTGGATCAGGTCCTGTACCATGGAAGCAAGCACCCAGCTTATTTAATTCTGTTTCTTCATCCAACGTGCATCCGGGTGTGTGCTCTCTAGTTGAATTGTCACCTAAAGTTGACAAAATTTATGGAAATGAAAGGTTACCTGTATTTTCTCTGGAAAAGAAAAATGAAAAATTTTCTGGACTATCCAACTGGAGCACTAAGCTTGGATCACGGGAGATAATGCTTGTGAATGGAGCAATGAACGAGGACAAATCTAGCTCATACTTTGATATTATTCAGCAGTCTCCTCTAAAGGAAGATTCATCTCCGCAACCTTTTGCATTACCTGTACCTTACACATCTACAAATGAAAGAAATGGTCAAATTGGGGTAACTGGAAATCAGCCACAACAGACTCCTTCAGCTCCTACAGGAAAGCAATATAGTGGCACTGTTCGTTTATCACTTGACTCGTCAGGTGAAACACAAGTTCGTAATGGACGGCCTCGAGTGGATGCACGAGGAAGAAGCCAGTTACTCCCACGGTACTGGCCCAGATGTACTGATCAGGAGCTACAGCAAATATCTATTGATTCTAATTCTGTCATTACCCCATTGTTTCAAAAAACCTTGAGCGCTAGTGATGCTGGGCGAATTGGGCGTCTCGTGCTTCCCAAGAAATGTGCTGAGGCTTATTTCCCACCTATTTATCAGCCTGAAGGGTTGCCACTTAAAATCCTTGATGCAAAAGGCAAAGAGTGGACATTTCAGTTTCGATTCTGGCCCAACAATAACAGTAGAATGTATGTTTTGGAAGGTGTCACTCCCTGCATACAGTCCATGCAGTTGCAAGCAGGTGACACAGTAACATTTAGCCGGATGGAGCCAGAAGGGAAGTTGGTTATGGGATTCCGAAAGGCTTCAACTCCTGCCCAATCCGAACAGGACAATGAAGGGAATAAGACCACAAATGGGAACTCCACAACTAGTGAAGTTGAAACGGCTGATCCTAGCTCATGGTCGAAAGTTGATAAATCAGGATACATTGCCAAAGAAGCACTTGGGAGCAAATCTTCAATCTCTAGAAAGAGAAAGAGTAGCATCTTGGGTTCAAAGAGTAAACGTTTAAGAATTGAAAATGAGGATATGATAGAGCTGAAAATAACTTGGCAAGAGGCTCAAGGCCTGCTACGGGCCCCTCCTGACCATGCTCCTAGCATTGTGGTGATTGAAGGTTTTGAATTTGAGGAATATGAGGATGCTCCAGTGCTGGGTAAGCCAACAATTTTCACCACTAGTAATGAAGGTGAAAAGATCCAGTGGGCTCAATGTGAAAATTGTCTCAAGTGGCGCAAATTGCCAGCAAATGCAATTCTTCCATCGAAATGGACGTGCTCTGATAATTCATGGGACCCAGAAAGATCCTCTTGCTCAGCGGCACAAGAGCTGACTGCAGAACAGCTTGAGAAATTGCTACCTTCTTGTAATTCAGCTATTTCAAAGAAAATGAAGCCCACTCAGCAAGAGCAAGATAATGTTGATGCTTTGGAAGGACTTGATACACTTGCAAACCTAGCTATCTTGGGAGAGGGTGAGTCACTCCCTACATCTACCCAGGTGACAACGAAGCACCCACGGCATAGACCCGGCTGCTCTTGCATTGTTTGCATTCAACCTCCCAGTGGTAAGGGCCCTAAGCATAAGCAGACATGCACGTGTACCGTCTGCTCAACGGTGAAGCGTCGATTCATTACCCTACAACAGAAGCGTGAGAAGAAACAAACAGAAAAGGCAGAGACGACACGGAAAAAGCAGCAGCCTCCTCACCCAGGACAATCATCTGAAATAGTGATTGAAGATGACTCATTGCCTTCTAGTAACACAAGAGATAGCAGCCCAAATCAGAACAAGGAGGGAAATGGCGGTTTAGATGACGATCCTAACCGGATAAAATCATCCACCTTACCATTCAAAGGTCAAATAGATCTCAATATCCAGCCCGAGCGAGAGGAAGACTTGTCGCCTCGATCAGATTCTGGTGGCGTGAAGGTACTCCATGATGGCACAGAAAGAAATCCTAGGCAGCTGAGTATTTTGAACTCCGGTGATGTCAATTCTTCAGGTAGCCAGTTACAGGTTGTTGGAGATGAAACAAGGGAACAAAAACTTAACAATGGTGTAGTCCTCGGAAATAATAGTCATAATTCTGATAGGGAGCTTGTGCAGCCTTTGACCATGAATGTGTGA 2619 0.4456 MASSAASVSSSCLPHSRFCYNPHCKGLKSQIPKKGWKLRSGDRAELCDRCGSAFEEGRFCETFHLNASGWRNCETCRKRIHCGCIVSYDTFTLLDPGGVECHGCAKSFHVEAYFKDRIRKFSEHDHNRNQLAGSGPVPWKQAPSLFNSVSSSNVHPGVCSLVELSPKVDKIYGNERLPVFSLEKKNEKFSGLSNWSTKLGSREIMLVNGAMNEDKSSSYFDIIQQSPLKEDSSPQPFALPVPYTSTNERNGQIGVTGNQPQQTPSAPTGKQYSGTVRLSLDSSGETQVRNGRPRVDARGRSQLLPRYWPRCTDQELQQISIDSNSVITPLFQKTLSASDAGRIGRLVLPKKCAEAYFPPIYQPEGLPLKILDAKGKEWTFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRMEPEGKLVMGFRKASTPAQSEQDNEGNKTTNGNSTTSEVETADPSSWSKVDKSGYIAKEALGSKSSISRKRKSSILGSKSKRLRIENEDMIELKITWQEAQGLLRAPPDHAPSIVVIEGFEFEEYEDAPVLGKPTIFTTSNEGEKIQWAQCENCLKWRKLPANAILPSKWTCSDNSWDPERSSCSAAQELTAEQLEKLLPSCNSAISKKMKPTQQEQDNVDALEGLDTLANLAILGEGESLPTSTQVTTKHPRHRPGCSCIVCIQPPSGKGPKHKQTCTCTVCSTVKRRFITLQQKREKKQTEKAETTRKKQQPPHPGQSSEIVIEDDSLPSSNTRDSSPNQNKEGNGGLDDDPNRIKSSTLPFKGQIDLNIQPEREEDLSPRSDSGGVKVLHDGTERNPRQLSILNSGDVNSSGSQLQVVGDETREQKLNNGVVLGNNSHNSDRELVQPLTMNV 872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60515g00018 872 MobiDBLite consensus disorder prediction 242 273 - -
Stsc60515g00018 872 MobiDBLite consensus disorder prediction 729 765 - -
Stsc60515g00018 872 MobiDBLite consensus disorder prediction 817 833 - -
Stsc60515g00018 872 MobiDBLite consensus disorder prediction 429 466 - -
Stsc60515g00018 872 Pfam CW-type Zinc Finger 564 606 IPR011124 GO:0008270
Stsc60515g00018 872 Pfam B3 DNA binding domain 331 430 IPR003340 GO:0003677
Stsc60515g00018 872 Gene3D - 309 435 IPR015300 -
Stsc60515g00018 872 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 16 820 - -
Stsc60515g00018 872 MobiDBLite consensus disorder prediction 711 728 - -
Stsc60515g00018 872 ProSiteProfiles Zinc finger CW-type profile. 559 609 IPR011124 GO:0008270
Stsc60515g00018 872 FunFam B3 domain-containing transcription repressor VAL1 309 436 - -
Stsc60515g00018 872 ProSiteProfiles B3 DNA-binding domain profile. 331 432 IPR003340 GO:0003677
Stsc60515g00018 872 SMART B3_2 331 432 IPR003340 GO:0003677
Stsc60515g00018 872 MobiDBLite consensus disorder prediction 711 833 - -
Stsc60515g00018 872 MobiDBLite consensus disorder prediction 432 465 - -
Stsc60515g00018 872 SUPERFAMILY DNA-binding pseudobarrel domain 328 430 IPR015300 -
Stsc60515g00018 872 MobiDBLite consensus disorder prediction 788 814 - -
Stsc60515g00018 872 CDD B3_DNA 329 430 IPR003340 GO:0003677
Stsc60515g00018 872 Gene3D - 563 616 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60515g00018 Stsc-Chr60515 88731 96656 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60515g00018 17 717 B3 DNA Binding Superfamily AT4G32010 45.787 0.0 551
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc60515g00018 B3 1.2e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60515g00018 K09287 - gmx:100807252 1295.41