Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60515g00004 ATGCGCACTTTCACTTTCTTCCAGCGTTTCTCTAAAGCTTTCCATGGCTACAACTCCCACTTCAAGCTTGTACTCCTCTGCACCACCGTTAGTGGCGGTGGACTTTTGGCATACGGCGAGGCGGTAGCTCAATCGGAAGCGGCTGTAGTGAAGGAGGAGAAGAAAAAGGTGGTGGTGCTGGGAACAGGTTGGGCAGGGACGAGCTTCTTGAAGAATCTGGACAATCCCAGATATGAGGTCCACGTGGTGTCTCCTCGCAACTATTTTGCCTTCACACCTTTGCTTCCTAGTGTCACGTGCGGCACCGTCGAGGCCCGCAGCATCGTTGAACCCGTTCGCAACTTCTTTAGAAAGAAAAATGTGAAAGTAGATTTCAGTGAAGCAGAATGTCTCAAGATTGACGCAGCAAACAGGAAAGTTTACTGTCGATCAAGTATAAGCAATAATTCGAATGAAAAAGATGAATTTGTTGTGGACTATGACTTCCTGATTATAGCTGTGGGAGCAAATGTAAACACATTCAATACTCCCGGGGTGGCGGAGAATTGCCATTTCTTGAAGGAAGTTGAAGATGCACAGAAGATCAGAAGAACTGTTATTGACTGCTTTGAGAGAGCAAGCTTACCTAGTGTAAGTCAAGAAGAGAAGAAGAGAATCCTTCATTTTGCTATTGTAGGAGGAGGTCCAACCGGGGTGGAGTTTGCAGCCTCTCTTCATGACTTTGTCAATGAAGATTTGGTCAAATTATACCCTGGTATAAAAGATTTGGTTAGAATTACGCTTCTGGAGGCAGGGGAACATATTTTGAGCATGTTTGACAAAAGAATCACTTCTTTTGCTGAGGACAAGTTCCGAAGAGATGGTATCGATGTGAAAACTGGATCCATGGTTGTGAAGGTATCTGATAAAGAAATTTCGACTAAAGAAATGAAAAATGGAGGAGAAATTACTACAATTCCATATGGAATGGCTGTCTGGTCAACTGGAATTGGGACTCGTCCATTTATTAAAGATTTTATGGCACAAATTGGCCAGATTAACAGGCGTGCTGTAGCTACTGATGAATGGTTGAGAGTTGAGGGAACCAACAATGTCTATGCACTTGGAGATTGTGCTACAATAAACCAGCGAAAAGTCATGGAAGATATTGCAGCAATCTTTAAGAAGGCAGATAAAGACAACTCAGGAACCCTCACAGTCAAAGAATTTCAAGAGGTATTGAATGACATCTGTGAGAGATACCCTCAGGTAGAACTGTATCTGAAGACCAGACAGATGAATGATATTGCTGATCTGTTGAAGGAAGCCAAGGGAGATGTTGAAAAGGAATCTATTGAGCTGAATATCGAAGAACTAAAAACTGCCCTTTCTAAAGTGGATTCTCAGATGAAGTTTCTTCCTGCTACAGCACAGGTTGCATCTCAGCAAGGCACCTACCTTGCCAAGTGCTTTAACAGGATGGAAGAGTGTGAAAAGAATCCAGAGGGTCCTATCAGATTCAGGGAAGAAGGACGCCATAGGTTCAAACCCTTCAGGTACAAGCATTTTGGTCAATTTGCTCCTCTGGGAGGAGAGCAGGCAGCTGCACAGCTTCCTGGTGACTGGGTTTCAATTGGTCATAGCACTCAATGGCTTTGGTATTCTGTCTATGCAAGCAAGCAAGTTAGCTGGCGCACAAGGGCATTAGTTGTAACAGACTGGACAAGGCGTTTTATTTTTGGAAGGGACTCGAGTCAAATCTGA 1743 0.4383 MRTFTFFQRFSKAFHGYNSHFKLVLLCTTVSGGGLLAYGEAVAQSEAAVVKEEKKKVVVLGTGWAGTSFLKNLDNPRYEVHVVSPRNYFAFTPLLPSVTCGTVEARSIVEPVRNFFRKKNVKVDFSEAECLKIDAANRKVYCRSSISNNSNEKDEFVVDYDFLIIAVGANVNTFNTPGVAENCHFLKEVEDAQKIRRTVIDCFERASLPSVSQEEKKRILHFAIVGGGPTGVEFAASLHDFVNEDLVKLYPGIKDLVRITLLEAGEHILSMFDKRITSFAEDKFRRDGIDVKTGSMVVKVSDKEISTKEMKNGGEITTIPYGMAVWSTGIGTRPFIKDFMAQIGQINRRAVATDEWLRVEGTNNVYALGDCATINQRKVMEDIAAIFKKADKDNSGTLTVKEFQEVLNDICERYPQVELYLKTRQMNDIADLLKEAKGDVEKESIELNIEELKTALSKVDSQMKFLPATAQVASQQGTYLAKCFNRMEECEKNPEGPIRFREEGRHRFKPFRYKHFGQFAPLGGEQAAAQLPGDWVSIGHSTQWLWYSVYASKQVSWRTRALVVTDWTRRFIFGRDSSQI 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60515g00004 580 PANTHER NADH DEHYDROGENASE 50 580 IPR045024 GO:0003954|GO:0006116
Stsc60515g00004 580 SMART efh_1 382 410 IPR002048 GO:0005509
Stsc60515g00004 580 SUPERFAMILY EF-hand 371 467 IPR011992 -
Stsc60515g00004 580 Gene3D - 46 418 - -
Stsc60515g00004 580 Gene3D - 421 579 - -
Stsc60515g00004 580 Pfam EF hand 383 408 IPR002048 GO:0005509
Stsc60515g00004 580 Coils Coil 433 462 - -
Stsc60515g00004 580 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 424 579 - -
Stsc60515g00004 580 SUPERFAMILY FAD/NAD(P)-binding domain 54 273 IPR036188 -
Stsc60515g00004 580 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 45 407 - -
Stsc60515g00004 580 ProSiteProfiles EF-hand calcium-binding domain profile. 378 413 IPR002048 GO:0005509
Stsc60515g00004 580 ProSitePatterns EF-hand calcium-binding domain. 391 403 IPR018247 -
Stsc60515g00004 580 SUPERFAMILY FAD/NAD(P)-binding domain 215 375 IPR036188 -
Stsc60515g00004 580 PRINTS FAD-dependent pyridine nucleotide reductase signature 160 178 - -
Stsc60515g00004 580 PRINTS FAD-dependent pyridine nucleotide reductase signature 28 47 - -
Stsc60515g00004 580 PRINTS FAD-dependent pyridine nucleotide reductase signature 221 239 - -
Stsc60515g00004 580 Pfam Pyridine nucleotide-disulphide oxidoreductase 55 380 IPR023753 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60515g00004 Stsc-Chr60515 19330 24270 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60515g00004 1 580 Chloroplast and Mitochondria Gene Families AT4G21490 73.242 0.0 875
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60515g00004 K03885 - gmx:100809915 1043.49