Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60515g00001 ATGAGGAAAATGGGTAACCAAGAAGACTTCGCCGGAGAACCCAACCAATTTAAGAAGGAGGAACCCGCCGGAACTTCCAACCTCCTCCGGCGAGCTGCGGAGCTCATTGCCACCGTGCTCTCCCTCTCCCTCTCGATCAGGTCCTTCGCCACCAAATGGCAACTCATCCGGACCAAGCTCGAGGAGCTCCACTCCGGCCTCATCGCCGCCGACAACTGCGACTCCGGCGAGAACCCCCATCTCACGGGCATCCTCCCATCGGTGATTTCGACAGCCGGCGAGTGCCGCGACTTGGCGCGCCGTTGCTCCGACCTCTCCTACAGCGGGAAGCTCCTTATGCAGAGCGATTTGGACATGGCGATCGCAAAGCTGGACGGCCACGTCAGCACCCTCTCGGAGATTTACAAAAGGGGAATCTTGGCGAATGGGTCTGCGCTTGTTGTTTCAAAACCGAGTCTTGGCGCTTCAAGAGAAGACATAAGGTTCTATGTGAGGGACCTATTAACGAGGATGAAGATTGGGGATTTGGGTATGAAGAAACTGGCTCTCAGGAACCTGTACGAGGTTGTCATCGAGGATGAGAGGTACGTTAAGGCCGTTGTGGACGTTGGTGACGTGATTCACGTGCTGGTTGGGTTTCTTAGTTCAACTGATTTGGGAATCCAAGAGGAGAGTGCCAGGGTTGTTTCTGTGATTGCAGGTTTTGGTTGCTACAAGGGCAATTTGGTCAATTCCGGGGTGGTTGCGTCGTTGGTTAGGGTGCTGGATTGTGGGAGCGAAGAAGGTAAAGTTGCTGCAGCGAGGTGTTTGGTGAAGCTCACTGAGAATTCTGATAACGCTTGGTGTGTTTCTGCACATGGTGGTGTCACTACATTGCTTAGAATTTGTGATGGTGATGATGGTGGTTGTAAAGGAGATTTGGTTGGTCCTGCGTGCGGTGTGTTAAGGAATCTTGTTAGTGTTGAAGAGATTAAGAGGTTTATGATTGAGGAAGGTGCGGTTTCTACTTTTTTAAGGCTTGTGAGGTCCAGGGATGAAGCTATTCAGGTCAATTCAATAGGGTTCATTCAGAACATTGCTTCTGGTGATGAATTGGTTAAGCAGATGGTGATTAGAGAAGGTGGAATCCGTGCCTTGTTGCGTGTTCTTGATCCTAAGTGGTCATGCTCTTACAAAACAAGAGAGATTTCAATGAGGGCTATTCAGAATTTGTTTTTCTCTCCGCTTAGTTCTGTCGCTGCTTTGATTAGTTACGGTTTTGTGGATAATTTGCTCTATTATGTTCGAAATGGCGAGGTTTCTATTCAAGAATTGGCTCTGAAAGTGGCGTTTCGATTCTCTGGGACGTCCGAGGAGGCGAAGAAATCAATGGGGGATGCAGGGTTCATGGCTGAGCTTGTCAAATTCCTGAATGCGAAATCGTTCGAGGTTCGCGAAATGGCGGCTGAGACACTGTCTGGGTTGGTTATGGTGCCTAAGAACAGAAAGAGGTTTGTGCAGGATGACCATAACATTGCACTAATCCTTCAATTGCTTGACACTGAAGAGGGGAATTCAGGTAACAAAAAGTTCCTAATCTCAATCTTAATGTCATTGACAAGTTGCAATAGTGGGAGGAAAAAGATTGTTAGTTCTGGTTATGCAAAGAACATTGAGAAGCTTGCAGATTCTCAAGTTTCTTCTGATGCCAAGAGGCTTGCAAAGAAGCTATCCACAAACAGGTTCCGCAGCTTATTCAGTGGAATCTGGCATTCATGA 1758 0.4824 MRKMGNQEDFAGEPNQFKKEEPAGTSNLLRRAAELIATVLSLSLSIRSFATKWQLIRTKLEELHSGLIAADNCDSGENPHLTGILPSVISTAGECRDLARRCSDLSYSGKLLMQSDLDMAIAKLDGHVSTLSEIYKRGILANGSALVVSKPSLGASREDIRFYVRDLLTRMKIGDLGMKKLALRNLYEVVIEDERYVKAVVDVGDVIHVLVGFLSSTDLGIQEESARVVSVIAGFGCYKGNLVNSGVVASLVRVLDCGSEEGKVAAARCLVKLTENSDNAWCVSAHGGVTTLLRICDGDDGGCKGDLVGPACGVLRNLVSVEEIKRFMIEEGAVSTFLRLVRSRDEAIQVNSIGFIQNIASGDELVKQMVIREGGIRALLRVLDPKWSCSYKTREISMRAIQNLFFSPLSSVAALISYGFVDNLLYYVRNGEVSIQELALKVAFRFSGTSEEAKKSMGDAGFMAELVKFLNAKSFEVREMAAETLSGLVMVPKNRKRFVQDDHNIALILQLLDTEEGNSGNKKFLISILMSLTSCNSGRKKIVSSGYAKNIEKLADSQVSSDAKRLAKKLSTNRFRSLFSGIWHS 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60515g00001 585 Gene3D - 162 575 IPR011989 -
Stsc60515g00001 585 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 22 584 - -
Stsc60515g00001 585 SMART arm_5 235 275 IPR000225 GO:0005515
Stsc60515g00001 585 SMART arm_5 276 320 IPR000225 GO:0005515
Stsc60515g00001 585 SMART arm_5 450 490 IPR000225 GO:0005515
Stsc60515g00001 585 SMART arm_5 321 361 IPR000225 GO:0005515
Stsc60515g00001 585 SMART arm_5 363 406 IPR000225 GO:0005515
Stsc60515g00001 585 SMART arm_5 193 234 IPR000225 GO:0005515
Stsc60515g00001 585 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 287 333 IPR000225 GO:0005515
Stsc60515g00001 585 Pfam Armadillo/beta-catenin-like repeat 323 361 IPR000225 GO:0005515
Stsc60515g00001 585 SUPERFAMILY ARM repeat 165 566 IPR016024 -
Stsc60515g00001 585 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 332 375 IPR000225 GO:0005515
Stsc60515g00001 585 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60515g00001 Stsc-Chr60515 2133 3890 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60515g00001 175 380 U-box Gene Family AT2G23140 24.272 4.24e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60515g00001 - - gmx:100809382 832.787