Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60513g00022 ATGGACACAGAAACAGATATGATGGCAGAAGTTGGAGACCACAATAGCAACAACACCACATGTCATCCACCTCTCAATTCCATGGAAGAGACCTCCTTTTGCTGTGAACAATTGCCAGAGGATGAATGCACTGAGATTCAAAAAGAAGAAGACGGTCCACTAGTTGAGTTAGATTGTCGAAATGTCTTTTCTGAAGGAAGAAAGGAGTTCGTCACACCTGCTGTCGGAATGGAGTTCGAGTCTTATGATGATGCTTACAATTATTATATCTGCTATGCCAAGGAGGTTGGATTTCGTGTAAGGGTGAAGAATTCATGGTTCAAGCGAAACAGCAGAGAAAAATATGGTGCGGTGCTTTGCTGTAGCAGCCAGGGATTCAAAAGAATAAAGGATGTTAACCACATGAGGAAAGAAACAAGAACTGGTTGTCCTGCAATGATTAGGATGAGGTTGATGGACTCTCAGAGGTGGAGGATACTCGAGGTCACACTTGAACATAACCACGTGTTAGGTGCTAAGATACATAAATCAGTTAAGAAGATGGGAAATGGAACCAAAAAGAAGTCATTGCCGAGCTCAAATTCTGAAGCACACACAGTTAAGTTATACCGTGCACTTGTGATAGATGCAGGAGGTAATTCTAATGCAATCTCAAATGCTAGAGAAGACAGAACTTCATCTGAATTTTCCAATTGGCTGAACCTTAAAAAGGGTGACACGCAAGCCATTTATAACTACCTGTGTCGTATGCAGTTGACTAATCCTAACTTCTTTTACTTGATGGATTTCAATGATGAAGGGCATTTGAGGAATGTATTTTGGGCAGATGCTAGGTCCAGGGCTGCAGGTGGTTATTTTGGTGATGTTATTTACTTTGACAACACTTATTTGTCGAGCAAATATGAAATCCCTCTTGTGGCTTTTGTTGGAATAAATCATCATGGGCAATCAGTGCTACTTGGTTGTGGTCTCCTTGCAGGTGAATCGTTAGAATCTTATGTATGGTTGTTCAGAGCATGGATTAAATCTCTGTCTGGATTTTCTCCCCAAACTATTATTACTGATAAATGCAAGGTTTTGCAAAGTGCCATTGCAGAAGTTTTTCCCGGATCTCTCCATCGTTTTGGTTTGCCACTAATCATGAAAAAAGTACCAGAGAAGTTGGGAGGGTTGCGCAACTATGATATGATTAGGAAAGAAATGATTAAAGCAATTTATGAGACGTTGAAAATGAATGAATTTGAATCAGCATGGGCATTCATGATTCAACGTTTTGGAGTTGGTGATCACGAATGGCTTCGTTCTTTATACGAAGATCGGAGTTCTTGGGCACCAGTATACCTGAAGGACACATTTTTTGCTGGAATGTCTGCGACACGACCTGGCGAAAGCTTTACTCCTTTTTTTGATAGATTTGTGCACAAACAGACTCCTTTAAAGGAGTTTCTTGATAAGTATGAACTAGCTCTCCACAAGAAGCACAAGGAAGAGGCTCTTGCAGACATCGAATCAAGAAGCTCAACACCCTTGCTGAAAACTAGATGTTCTTTTGAATTGCAGCTCTCTAGAATATACACTAGGCAAATGTTCATGAAGTTCCAATTTGAGGTGGAAGAAATGTATTCCTGTTTCGGTACAACGCAGTTACACGTGGATGGTCCGGCCATAATCTTCTTGGTCAAGGAGCGTGTCTTGTGTGAAGGAAATCGGCGGGAGATCAGGGACTTTGAAGTTCTGTACAGTAGGCCAGCAGGTGAAATACGCTGCATCTGTAGTTGCTTTAATTTTTACGGATACTTATGTCGGCACGCGTTGTGTGTGCTAAATTTCAATGGGGTGGAAGAGATACCTTCCAGATACATTCTTTCAAGGTGGAAGAAAGATTACAAGCGCCTTCATATTCCTGATCATAACACTGGTGTTGCTGATGATATTGACCATACTCAATTATCTAATCAATTATTTAGAAGTGCCTTACAAGTTGTGGAGGAAGGGACAATTTCTTTGGACCATTACAATGTAGCTTTGCATGCTATTGAAGAATCACTAAATAAGGTTCATGATGTAGAATTTAGGCAGATATAA 2085 0.4062 MDTETDMMAEVGDHNSNNTTCHPPLNSMEETSFCCEQLPEDECTEIQKEEDGPLVELDCRNVFSEGRKEFVTPAVGMEFESYDDAYNYYICYAKEVGFRVRVKNSWFKRNSREKYGAVLCCSSQGFKRIKDVNHMRKETRTGCPAMIRMRLMDSQRWRILEVTLEHNHVLGAKIHKSVKKMGNGTKKKSLPSSNSEAHTVKLYRALVIDAGGNSNAISNAREDRTSSEFSNWLNLKKGDTQAIYNYLCRMQLTNPNFFYLMDFNDEGHLRNVFWADARSRAAGGYFGDVIYFDNTYLSSKYEIPLVAFVGINHHGQSVLLGCGLLAGESLESYVWLFRAWIKSLSGFSPQTIITDKCKVLQSAIAEVFPGSLHRFGLPLIMKKVPEKLGGLRNYDMIRKEMIKAIYETLKMNEFESAWAFMIQRFGVGDHEWLRSLYEDRSSWAPVYLKDTFFAGMSATRPGESFTPFFDRFVHKQTPLKEFLDKYELALHKKHKEEALADIESRSSTPLLKTRCSFELQLSRIYTRQMFMKFQFEVEEMYSCFGTTQLHVDGPAIIFLVKERVLCEGNRREIRDFEVLYSRPAGEIRCICSCFNFYGYLCRHALCVLNFNGVEEIPSRYILSRWKKDYKRLHIPDHNTGVADDIDHTQLSNQLFRSALQVVEEGTISLDHYNVALHAIEESLNKVHDVEFRQI 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60513g00022 694 ProSiteProfiles Zinc finger SWIM-type profile. 576 612 IPR007527 GO:0008270
Stsc60513g00022 694 Pfam MULE transposase domain 289 382 IPR018289 -
Stsc60513g00022 694 Pfam SWIM zinc finger 586 608 IPR007527 GO:0008270
Stsc60513g00022 694 SMART 26again6 587 614 IPR006564 GO:0008270
Stsc60513g00022 694 Pfam FAR1 DNA-binding domain 87 170 IPR004330 -
Stsc60513g00022 694 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 58 688 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60513g00022 Stsc-Chr60513 103100 106179 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Stsc60513g00022 MULE 2.3e-24 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60513g00022 - K17604 gmx:100796448 1145.57