Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60513g00015 ATGGATAAAAGAATACTAATGTTCCTACTACTCATTTTCAGTTCTATCTTAGCTGTCGCAGCAAGAACAGCAAATCAAGATTACCAAACTCTGCTGGCTCTAAAGAATGAGTGGCAGAACACACCACCTGATTGGGATCGCTCGAATGATCCTTGTGGAGAAGGTTGGGTTGGCATTGGGTGCATCAACGGAGCCGTTACCTCCATAACATTGGCAAGCATGAGTTTGAGTGGCCAGCTTTCATCAGACATTGGAGGAATATCTGAATTGCGAATTCTGGATCTCTCCTACAATAAGAATTTAACAGGACCACTTCCCATGGCAATTGGAAACTTGAGAAAGCTGACAAACTTAATTCTTGCCGGCTGTGGTTTCAGTGGTGTTATACCGGATACAATTGGAAATCTGCAACGGCTTGCATTCTTGGCTTTAAATTCAAATAACTTCATCGGGCAAATTCCACCCACTATTGGTAATCTCACAAATTTATCATGGCTGGACTTGTCTGAAAACCAGCTTGAAGGGCCTATCCCAATATCAAATGGAACCTCTCCTGGTCTCGATATGCTACACCAGACAAAGCACTTCCATTTTGGGACTAACAAACTTTCAGACAATATTCCTCCTCAGCTTTTTAACTCAGACATGTCACTGATACATGTGCTTTTTGAGGGTAACCAGTTTACTGGAAATGTTCCATCTACACTTGGACTAGTCCAGAGTCTTGAGGTTCTGCGCCTTGATGGTAATTATCTAAGTGGATCGGTGCCTACGAATATTAGCAACCTTACAAATCTTAGGGATTTGCTCCTCTCCAACAATCGCCTATCTGGTCCCCTTCCCAACCTTACTGGATTGAACGTTCTCAGCTTCCTGGATGTGAGCAATAATAGTTTTGATCCATCAGAGTTTCCACTATGGTTGACAAGCCTACAGTCTATGACAACACTAATCATGGAGAATACAAAACTTCAAGGGAATATTCCTGTTTCATTTTTCAGTTTGAGCCAGTTACAGACAGTGAATCTGAAAAACAACCAGCTAAATGGAACATTAGATATTGGCACTACCATCAGCGACCAATTGGAAGTCCTTAATTTGCAGACCAACTTAATTGATAAGTTTAATCCAGAAATTAATGTATCCAAAGTGGAAATAATACTTGTCGATAATCCGGTTTGTGGAGGAGGAGCTTCTCAGGATTATTGTTCCATTCCACAACAAAACAACCTGTATACAACACCACTGAACAATTGTGTGCCTGTTACCTGCAGCACAGATCAGAAAGAAAGCCCTAACTGCAAATGTGCATATCCATATACAGGAACTTTAGCTTTCAGGGCACCAAGCTTCTCTGACTTGCAAAACCAGTCGGTCTTTGCATTGCTGGAGTCATCTATGATGCAGACTTTTCATCAATATAATCTACCTGTGGACACAGTTTCTGTGAGCAATCCAAGAAAGGAAGGATTGTACCTTGATTTGAGTCTAGAAGTGTTCCCATCCGGCCAAGATCGTTTCAACCGAACAGGGATTATCAATATAGGCTTTGTGCTTAGCAACCAGATATATAAGCCTCCTGCACCTTTTGGACCAGTTAATTTTATTGCTGATAGTTATGAATACTATACGGCTGACTCAGTATTAATCATCTCTGAAGGATCCAGTAAATCTTCACATACTGGACTAATAGCTGGAGTTGCTGGGGCAAAATGGGAAGAAGATGCGAGCAATACTAGTACCCCGCAGCTAAAAGGAGCAAGGCACTTCACTTTTGAAGAAATTCAGAACTACACCAAAAACTTCTCGCAGGCCAATGATATTGGATCTGGAGGATACGGGAAGGTTTATCGAGGAACTCTTCCAAACGGGCAACTTATTGCTGTTAAAAGAGCTCAGAAGGAATCAATGCAGGGAGGGCTGGAGTTCAAGACTGAGATTGAAATGCTATCAAGGGTCCACCATAAGAATCTTGTTAGCCTTATAGGTTTCTGCTTTGAGCAAGGAGAACAGATGCTGATTTATGAATATGTTCCTAATGGCACTTTGAAGGATACTCTTTCAGGTAAATCAGGAATAAAATTGGACTGGATTAGAAGGCTAAAAATTGCACTTGGTGCTGCCAGGGGGCTGGATTATCTCCATGAACATGCCAATCCATCTATCATACATAGGGACATCAAATCCACAAACATATTATTGGATGAACGCTTGAATGCGAAAGTTTCTGATTTTGGACTCTCCAAACCATTGGGAGATGGCGAAAAAGGTTACGTTACCACTCAAGTCAAAGGAACAATGGGCTACTTGGACCCGGAGTACTATATGACTCAACAATTGACAGAAAAGAGTGACGTGTATAGTTTCGGAGTACTGATGTTGGAACTGATCACAGCAAGGAGGCCAATAGAACGAGGAAAATACATTGTGAAAGTGGTTAAGAATGCCATAGACAAGGACAAAGAGTTCTATGGCCTTAAGGAAGTCCTTGACACATCCCTTGATTCGGGAACAACACCACCGGGTTTTGACAAGTTTGTTGATGTTGCAATGCAATGTGTTGATGAGTCAAGTTCTAGCAGACCCTCAATGAATTTTGTGGTGAAAGAGATTGAGAAGATGTTGCAGTTGGCTGGTTCAAACCCTAATGCAGAGTCTGCATCCACTTCATCCAGTTATGAAGTAAGCAAAGGGAGTTCTCAACATCCTTACAACAATGAGTTGTTTGATTCAAGTGTGGTGATTCCACGTCCTTAA 2757 0.4164 MDKRILMFLLLIFSSILAVAARTANQDYQTLLALKNEWQNTPPDWDRSNDPCGEGWVGIGCINGAVTSITLASMSLSGQLSSDIGGISELRILDLSYNKNLTGPLPMAIGNLRKLTNLILAGCGFSGVIPDTIGNLQRLAFLALNSNNFIGQIPPTIGNLTNLSWLDLSENQLEGPIPISNGTSPGLDMLHQTKHFHFGTNKLSDNIPPQLFNSDMSLIHVLFEGNQFTGNVPSTLGLVQSLEVLRLDGNYLSGSVPTNISNLTNLRDLLLSNNRLSGPLPNLTGLNVLSFLDVSNNSFDPSEFPLWLTSLQSMTTLIMENTKLQGNIPVSFFSLSQLQTVNLKNNQLNGTLDIGTTISDQLEVLNLQTNLIDKFNPEINVSKVEIILVDNPVCGGGASQDYCSIPQQNNLYTTPLNNCVPVTCSTDQKESPNCKCAYPYTGTLAFRAPSFSDLQNQSVFALLESSMMQTFHQYNLPVDTVSVSNPRKEGLYLDLSLEVFPSGQDRFNRTGIINIGFVLSNQIYKPPAPFGPVNFIADSYEYYTADSVLIISEGSSKSSHTGLIAGVAGAKWEEDASNTSTPQLKGARHFTFEEIQNYTKNFSQANDIGSGGYGKVYRGTLPNGQLIAVKRAQKESMQGGLEFKTEIEMLSRVHHKNLVSLIGFCFEQGEQMLIYEYVPNGTLKDTLSGKSGIKLDWIRRLKIALGAARGLDYLHEHANPSIIHRDIKSTNILLDERLNAKVSDFGLSKPLGDGEKGYVTTQVKGTMGYLDPEYYMTQQLTEKSDVYSFGVLMLELITARRPIERGKYIVKVVKNAIDKDKEFYGLKEVLDTSLDSGTTPPGFDKFVDVAMQCVDESSSSRPSMNFVVKEIEKMLQLAGSNPNAESASTSSSYEVSKGSSQHPYNNELFDSSVVIPRP 918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60513g00015 918 MobiDBLite consensus disorder prediction 879 918 - -
Stsc60513g00015 918 Gene3D Transferase(Phosphotransferase) domain 1 678 897 - -
Stsc60513g00015 918 Gene3D Ribonuclease Inhibitor 182 281 IPR032675 -
Stsc60513g00015 918 MobiDBLite consensus disorder prediction 879 908 - -
Stsc60513g00015 918 ProSitePatterns Serine/Threonine protein kinases active-site signature. 722 734 IPR008271 GO:0004672|GO:0006468
Stsc60513g00015 918 FunFam Leucine-rich repeat protein kinase family protein 183 282 - -
Stsc60513g00015 918 SUPERFAMILY L domain-like 60 424 - -
Stsc60513g00015 918 FunFam Leucine-rich repeat protein kinase family protein 568 677 - -
Stsc60513g00015 918 SMART serkin_6 602 875 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60513g00015 918 ProSiteProfiles Leucine-rich repeat profile. 265 287 IPR001611 GO:0005515
Stsc60513g00015 918 ProSitePatterns Protein kinases ATP-binding region signature. 608 630 IPR017441 GO:0005524
Stsc60513g00015 918 Gene3D Ribonuclease Inhibitor 23 181 IPR032675 -
Stsc60513g00015 918 Pfam Leucine rich repeat N-terminal domain 24 61 IPR013210 -
Stsc60513g00015 918 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 678 887 - -
Stsc60513g00015 918 SUPERFAMILY Protein kinase-like (PK-like) 588 894 IPR011009 -
Stsc60513g00015 918 Pfam Protein tyrosine and serine/threonine kinase 605 870 IPR001245 GO:0004672|GO:0006468
Stsc60513g00015 918 Gene3D Phosphorylase Kinase; domain 1 572 677 - -
Stsc60513g00015 918 PANTHER RECEPTOR-LIKE PROTEIN 55 35 874 - -
Stsc60513g00015 918 CDD STKc_IRAK 608 874 - -
Stsc60513g00015 918 Gene3D Ribonuclease Inhibitor 282 436 IPR032675 -
Stsc60513g00015 918 ProSiteProfiles Protein kinase domain profile. 602 875 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60513g00015 918 FunFam Leucine-rich repeat family protein 26 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60513g00015 Stsc-Chr60513 73509 79757 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60513g00015 7 916 Receptor kinase-like Gene Family AT5G49760 55.603 0.0 965
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Stsc60513g00015 PK_Tyr_Ser-Thr 4.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60513g00015 - - aip:107638780 1574.3