Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60512g00013 ATGGTTGCTTTATGTTGTTTTCCTCACTCGCATTCTAATACTGCAGATCTTCAATCTGCTTATTTGTGCAAAAGACCTCTGTTATTCTTAATCATGGCAACTAGACTCCAGTTTGAGAATAATTGTGAAGTTGGAGTGTTTTCTAAACTTACTAATGCCTATTGTTTGGTTGCCATAGGAGGATCTGAAAACTTCTACAGTGTATTTGAATCTGAGTTAGCAGATGTCATCCCAGTGATCAAAACATCCATTGGTGGAACTCGAATTATTGGACGCCTTTGTGCAGGAAACAAAAATGGGCTTCTCGTGCCCCATACAACCACAGACCAAGAACTTCAACATTTGAGAAACTGTCTGCCCGATCAAGTAGTCGTTCAGAGAATAGATGAAAGATTATCTGCTCTCGGAAATTGTATAGCTTGTAATGACCATGTGGCTCTCACTCACACCGATCTTGACAGGGAGACAGAGGAAATGATTTCGGATGTTCTTGGGGTAGAAGTTTTTAGGCAGACCATTGCCGGCAATATTCTTGTCGGTAGCTACTGTGCCTTCTCCAACAGAGGGGGCTTGGTCCACCCTCATACTTCCATAGAAGACTTGGATGAGCTCTCTACGCTTCTTCAGGTTCCTTTGGTGGCTGGGACAGTGAACCGTCGCAGTGAAGTGATAGCTGCAGGAATGACAGTGAATGACTGGACAGCGTTTTCCGGCTCGGACACCACGGCAACAGAGCTGTCTGTGATTGAGAGTGTTTTCAAACTGAGGGAGGCACAGCCTAGTGCCATTGTGGATGAGATGAGAAAATCTCTCATTGATAGTTATGTCTAA 831 0.4404 MVALCCFPHSHSNTADLQSAYLCKRPLLFLIMATRLQFENNCEVGVFSKLTNAYCLVAIGGSENFYSVFESELADVIPVIKTSIGGTRIIGRLCAGNKNGLLVPHTTTDQELQHLRNCLPDQVVVQRIDERLSALGNCIACNDHVALTHTDLDRETEEMISDVLGVEVFRQTIAGNILVGSYCAFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRRSEVIAAGMTVNDWTAFSGSDTTATELSVIESVFKLREAQPSAIVDEMRKSLIDSYV 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60512g00013 276 Pfam eIF-6 family 35 234 IPR002769 GO:0042256|GO:0043022
Stsc60512g00013 276 NCBIfam translation initiation factor IF-6 35 255 IPR002769 GO:0042256|GO:0043022
Stsc60512g00013 276 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 6 32 275 IPR002769 GO:0042256|GO:0043022
Stsc60512g00013 276 SMART eIF6neu2 34 235 IPR002769 GO:0042256|GO:0043022
Stsc60512g00013 276 FunFam Eukaryotic translation initiation factor 6 32 256 - -
Stsc60512g00013 276 Gene3D - 32 256 - -
Stsc60512g00013 276 SUPERFAMILY Pentein 32 255 - -
Stsc60512g00013 276 Hamap Translation initiation factor 6 [eif6]. 21 276 IPR002769 GO:0042256|GO:0043022
Stsc60512g00013 276 PIRSF Transl_init_IF-6 32 257 IPR002769 GO:0042256|GO:0043022
Stsc60512g00013 276 CDD IF6 33 254 IPR002769 GO:0042256|GO:0043022
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60512g00013 Stsc-Chr60512 86050 87934 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60512g00013 32 276 Eukaryotic Initiation Factors Gene Family AT3G55620 91.429 2.60e-171 471
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60512g00013 K03264 - ming:122066887 468.774