Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60512g00010 ATGCCACCTGGTTTCGATTACAGCATCGATGATCTGTATGAGGAAGCTAAGAGAAGATGGCTGAAGCCGGTTGAAGTGCTATACATTTTACAGAATCATGACCAGTGCAACTTCACCAATCTGCCCCCTCAAAAACCAGCAAGTGGATCCTTGTTTCTATTTAATAGAAGAATCATGCGTTTCTTCCGTAAAGACGGCTATAATTGGCGGAAGAAGAGGGATGGAAGAACTGTGGGAGAAGCACATGAACGTCTTAAGATTGGAAATGTTGAAATACTAAATTGTTACTATGCACATGGAGAGGAGAACCGTAGTTTCCAGAGGAGGAGCTACTGGATGCTGGATCCGGCATATGAGCATATTGTTCTTGTGCATTACAGAGAAACAAAGGGGAACTCAGGTTCTGGACCTAACCCACTATTGTCTCAAGGCTCCTCTCCTGAATTTAGTCAGAATCAAAGCTCACGTACTACGATTGACCGTGGGACAATATCTGTTTTGGGTGATTCGTGTGAACCTACTCAGAATTTCTCCAGTCCTGAATCTGTGGAAGTTTCCTCTGATATCATCAGAAACAATGGAATGGATCAGTTCGATGAAACAGATGCAGTCTTGCGTCAATTGAAGCAACAATTAAGTTTGGATAAGGACAGATGTGAAGAAAGTTATCCCATGTACAAGAATCAATCTGAAGCTTTCACTGTGCCAAATGATTATGTACAAGCCTATTATGAGTATAATGGAAGACAAGGTGACAATGGTAAACATTATAATCAACTATTAAACTGTGATCAACCAGATGCAAATGAAAACGCCTTATCTTGGACAGAGGTGCTTGAGTCGTGTAAGCCTGCAAGCTTGACCAATTTACCTGAGCAACATGAGTATGAAGCATATGGAAATGGTAGGTCACTACATTCTTCACAAAGTGTAAGGATTGACAATCAAGAAAACAGTCAGTGGATAAACTCCAACAGTATTAATGCTGAAAATTCTGTCTTTCCTCGTCCTCATGATGGTGGAACCAAATTTCCTCTGTATTTGACAGTTGAAGCTCAACAACGTAGTTCTGACTATTATGCAACATCATTTGATCAAATCCAAATACCACAACCTTTGGATGCAGATTCAAGCCTGACAATTTCACAGAAACAAAAATTCACAATCAGGACAATCTTTCCAGAATGGTGTTATGCCACAGAGACTTCAAAGGTGGTCATTATTGGGTCGTTTCTCTGTCCTCCCTTGAATTCTACCTGGGCTTGTATGTTTGGTGATATTGAAGTGCCTGCTGAGATAATTCAGGATGGTGTTATCTGTTGTGAAGCTCCACCCCACCTTCCTGGAAAGGTTAATCTCTGCATTACTTCTGGAAATCGAGAGTCCTGCAGTGAAGTTCGAGAGTTTGAGTTTCGCAATAAGACAAATAGTTGCACTCGTTGTAACTCAATGGAAACAGAAACTACTAGAAGCCCAGATGAGCTGTTATTACTTGTAAGATTTGCACAGATACTCCTTTCTGCTCCAGCTAAAAAGAATGACAACAGGGAACCTGTATATCATCTTCCAGTGGAACACAAAGCAGATGATGATACATGGAGCCATGTTATAGAGTCTCTACTAGTCGGCAGTGGAAATTCATCAGCTACTATTGATTGGCTTCTTGAAGAGCTGCTGAAGGATAGGCTACAGCTGTGGCTTTCTGGCAAATCCCAGGAAATAGATGAAGCAACTGGCTGCCCTCTGTCCAAGAAAGAGCAAGGGATTATACACATGGTTGCTGGATTGGGTTATGAGTGGGCCTTGAACCCTATTCTCAGTTGTGGCGTGAATATAAATTTCCGTGACATCAGGGGGTGGACTGCCCTTCATTGGGCTGCACGGTTTGGAAGGGAAAAAATGGTTGCTTCACTTATTGCTGCTGGTGCATCTGCTGGAGCAGTAACTGATCCAACATCTGCAGACCCAGATGGGAAAACTGCTGCGGCTATTGCTGACAGCAATGGCCATAAGGGACTGGCCGGTTATCTTTCAGAAATGGCTTTGACTAGCCATCTTTCGTCTCTCACCCTGGAAGAGTGTGAGATTGCTAAAGATACTGCCAAGATTGAAGCAGAGTTAGCTGTCAGTCATGTGTCGAAGGAAGATATTGGAGAGGATCGGGTTTCACTGGCTGCTGTGAGAAATGCTGCTCTTGCTGCTTCTCGGATACAGGCTGCGTTTCGTGCTCATTCTTTCAAAAAGCGGAAAGAGAAGGAAGCTGCAGCTGCCGCTGCTGCTAGTCTAGATGGGTATGATATTGATGCTGATGCCATTGGTAACATTCTAGCCCTTTCTCCCAGCCCAGGACATAGCTTTGGGAGGTCACGTGATTACAATGCAGCTGCTTTATCAATTCAGAAGAAATATCGAGGCTGGAAAAGTCGCAAAGATTTCTTAGAACTGCGGCAAAAAGTAGTAAAGATACAGGCTCATGTGAGGGGTCACCAGGTTCGGAAGCAATACAAGATAATAGTATGGGCGGTTGGAGTCTTGGAGAAGGTAGTGCTACGATGGCGAAGAAAAAGATCCGGTCTACGAGGTTACAAACAAGAGTCAATTGATGAAAATGACGACGAGGATTTTCTCAAGGTGTTTCGGAAGCAGAAAGTGCATGTAGCAATTGAAAAAGCTTTAACTCGGGTGCTGTCCATGGTCCATTCTAAGGGTGCCCGTCAACAATATCACCGCATGCTTGAGATGTATCGTGAAGCTAAGGCTGAACTTGGTAGCACGAGTGATGAAGGGCCATTATCGACGTCTGGAGGGGACGCATCAATTATAGATGACGATGATGAACTCTTTCAAATTCCCTGGGGCTGGAAGACACTCTAG 2874 0.436 MPPGFDYSIDDLYEEAKRRWLKPVEVLYILQNHDQCNFTNLPPQKPASGSLFLFNRRIMRFFRKDGYNWRKKRDGRTVGEAHERLKIGNVEILNCYYAHGEENRSFQRRSYWMLDPAYEHIVLVHYRETKGNSGSGPNPLLSQGSSPEFSQNQSSRTTIDRGTISVLGDSCEPTQNFSSPESVEVSSDIIRNNGMDQFDETDAVLRQLKQQLSLDKDRCEESYPMYKNQSEAFTVPNDYVQAYYEYNGRQGDNGKHYNQLLNCDQPDANENALSWTEVLESCKPASLTNLPEQHEYEAYGNGRSLHSSQSVRIDNQENSQWINSNSINAENSVFPRPHDGGTKFPLYLTVEAQQRSSDYYATSFDQIQIPQPLDADSSLTISQKQKFTIRTIFPEWCYATETSKVVIIGSFLCPPLNSTWACMFGDIEVPAEIIQDGVICCEAPPHLPGKVNLCITSGNRESCSEVREFEFRNKTNSCTRCNSMETETTRSPDELLLLVRFAQILLSAPAKKNDNREPVYHLPVEHKADDDTWSHVIESLLVGSGNSSATIDWLLEELLKDRLQLWLSGKSQEIDEATGCPLSKKEQGIIHMVAGLGYEWALNPILSCGVNINFRDIRGWTALHWAARFGREKMVASLIAAGASAGAVTDPTSADPDGKTAAAIADSNGHKGLAGYLSEMALTSHLSSLTLEECEIAKDTAKIEAELAVSHVSKEDIGEDRVSLAAVRNAALAASRIQAAFRAHSFKKRKEKEAAAAAAASLDGYDIDADAIGNILALSPSPGHSFGRSRDYNAAALSIQKKYRGWKSRKDFLELRQKVVKIQAHVRGHQVRKQYKIIVWAVGVLEKVVLRWRRKRSGLRGYKQESIDENDDEDFLKVFRKQKVHVAIEKALTRVLSMVHSKGARQQYHRMLEMYREAKAELGSTSDEGPLSTSGGDASIIDDDDELFQIPWGWKTL 957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60512g00010 957 Gene3D Immunoglobulins 382 474 IPR013783 -
Stsc60512g00010 957 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 9 921 - -
Stsc60512g00010 957 FunFam Calmodulin-binding transcription activator 2 382 476 - -
Stsc60512g00010 957 FunFam Calmodulin-binding transcription activator 2 791 839 - -
Stsc60512g00010 957 ProSiteProfiles CG-1 DNA-binding domain profile. 9 135 IPR005559 GO:0003677
Stsc60512g00010 957 Pfam IQ calmodulin-binding motif 794 812 IPR000048 GO:0005515
Stsc60512g00010 957 Pfam IQ calmodulin-binding motif 817 836 IPR000048 GO:0005515
Stsc60512g00010 957 Gene3D - 475 683 IPR036770 -
Stsc60512g00010 957 SMART iq_5 791 813 IPR000048 GO:0005515
Stsc60512g00010 957 SMART iq_5 729 751 IPR000048 GO:0005515
Stsc60512g00010 957 SMART iq_5 814 836 IPR000048 GO:0005515
Stsc60512g00010 957 ProSiteProfiles IQ motif profile. 815 839 IPR000048 GO:0005515
Stsc60512g00010 957 SMART CG_1_2 12 130 IPR005559 GO:0003677
Stsc60512g00010 957 Pfam CG-1 domain 15 128 IPR005559 GO:0003677
Stsc60512g00010 957 ProSiteProfiles Ankyrin repeat region circular profile. 618 644 - -
Stsc60512g00010 957 ProSiteProfiles Ankyrin repeat profile. 618 650 IPR002110 GO:0005515
Stsc60512g00010 957 SMART ANK_2a 618 647 IPR002110 GO:0005515
Stsc60512g00010 957 Gene3D - 791 839 - -
Stsc60512g00010 957 ProSiteProfiles IQ motif profile. 733 759 IPR000048 GO:0005515
Stsc60512g00010 957 MobiDBLite consensus disorder prediction 131 159 - -
Stsc60512g00010 957 ProSiteProfiles IQ motif profile. 792 821 IPR000048 GO:0005515
Stsc60512g00010 957 SUPERFAMILY Ankyrin repeat 588 680 IPR036770 -
Stsc60512g00010 957 Pfam IPT/TIG domain 388 464 IPR002909 -
Stsc60512g00010 957 MobiDBLite consensus disorder prediction 129 159 - -
Stsc60512g00010 957 SUPERFAMILY E set domains 388 472 IPR014756 -
Stsc60512g00010 957 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 789 843 IPR027417 -
Stsc60512g00010 957 Pfam Ankyrin repeats (3 copies) 592 678 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60512g00010 Stsc-Chr60512 68986 77096 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60512g00010 5 950 CAMTA Transcription Factor Family AT1G67310 48.625 0.0 840
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Stsc60512g00010 CG-1 1.1e-47 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60512g00010 K21596 - gmx:100791430 1173.69