Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60510g00009 ATGGCTGATAATGATATCAATCCCATTGTTCTCTCCCAAATTCCTGAAGCTTTTGAATCTGAGTCCTTAGGCCACTATAGCCAAGTGAGCTTTGTTACCCTACATAGCGATTATGCAAACTCAACTTCGAAAAGTGATGTCAATCAAACCGCAAACAAAAGAAAATCATCTTCTGAGGTTGAGAGGTACATCCTCGTACCCCATGTCAACACAAACAATATTGACGATCTTCTCCCGAGATCGAAAAAGGCACGTGGAAGGCCACATGGCTTGACAAACAAGCCGATGCCACCCATTTTCATAAGGGGGGTAAATGAACATGGCATGTGTCCGATCCTCATTGAGATGATCCCCAGAGTTGATGTAATTGAGGCTTTAATCAACTTTGCCGCGTGCCGCCGCATCGGAATATCGATCATAAGTGCTTGTGGACCAATCTCCGGGGCGACAATTCACAACACACTGCCCTTAAACACTAACCCTGTTGACTTACGCATGATAGGACCGTTTCGTATGATGTCCCTCTCAGGAACCTATTATGATGGCCTTGTACATCCTGGATGTTCTTCCTTCTTGATTCTTCTTGGAGGAACAAATGGCCAAGTTTTTAGTGGAATCGTTGCTCGGAAAGTTGTGGCTGCAGGAACTGTGATGGTTATGGCTACCTCATTCGAGAAGCCTGAGCTTCACAGGATGCAACTCGATCCAAATAGAGAAAACACCAACAACAACGTTAATATCAATGGGAATGATAATGTTGTTAAGTTATTTACATATGAAACTGGTAATCCTAGTATAGTTAATCGACGAACTGTGGTTACTAAACTCGTTCCTCTTAACGTTGGCAACCATAGTGATGGCGGCAGCGGTAGTGCTGATGTTGATGCCACTAATGTAAAAAATGAGCAAGTGCTTATCGATGATAACTATCAGGTTTAA 939 0.4313 MADNDINPIVLSQIPEAFESESLGHYSQVSFVTLHSDYANSTSKSDVNQTANKRKSSSEVERYILVPHVNTNNIDDLLPRSKKARGRPHGLTNKPMPPIFIRGVNEHGMCPILIEMIPRVDVIEALINFAACRRIGISIISACGPISGATIHNTLPLNTNPVDLRMIGPFRMMSLSGTYYDGLVHPGCSSFLILLGGTNGQVFSGIVARKVVAAGTVMVMATSFEKPELHRMQLDPNRENTNNNVNINGNDNVVKLFTYETGNPSIVNRRTVVTKLVPLNVGNHSDGGSGSADVDATNVKNEQVLIDDNYQV 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60510g00009 312 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 45 250 IPR014476 GO:0003680
Stsc60510g00009 312 SUPERFAMILY AF0104/ALDC/Ptd012-like 111 234 - -
Stsc60510g00009 312 ProSiteProfiles PPC domain profile profile. 106 248 IPR005175 -
Stsc60510g00009 312 Pfam Plants and Prokaryotes Conserved (PCC) domain 111 225 IPR005175 -
Stsc60510g00009 312 CDD DUF296 121 224 IPR005175 -
Stsc60510g00009 312 Gene3D - 111 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60510g00009 Stsc-Chr60510 73743 74681 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60510g00009 65 263 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 28.431 1.74e-22 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60510g00009 - - adu:107496595 270.781