Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60509g00014 ATGGCGCAGCCTGCAGAAATACCATCCTCTTCTTTCACCGGTGAGTGGACTTATGATGTTTTCCTCAGCTTTAGAGGGGAAGATACCCGCCACAGTTTCACTGGTAATCTCTACCATGCTTTGGATCAAAAGGGAATACACACTTTCATTGATGATGAAGGCCTTAGAAAGGGAGATGAAATTAGGCCATCCCTTCTCAAAGCAATTCAAGAATCTAGGATTGCTATAGTTGTTTTCTCTAAAAATTACGCATCCTCGACTTATTGTTTGGACAAACTTGTCACAATTCTTGAGCACTTGAAGAAACCAGGTCGACTAGTTTGGCCTATTTTTTATGATGTGGAAGCATCCGATGTTCGACATCAGAGAGGTAGTTATGCAGAAGCTTTAGCAAAACAGGAAGAAAGGTACCAAGATGACAAGGGCAAAGTGCAAAAATGGAGGGTTGCTTTGCGTGATGCAGCTGATTTGTCTGGTTGGAATTTCAAACCGGGGTCTCAAACAGAATATAAGTTTATCAAAAGCATCGTTAGCGTTGTTTCCAAAAAGCTCAATCACACTCCTTTACATGTTGCTGACAACCCAGTTGGGCTAGAATCACGGGTGCTTCAGGTGAAATCTATAATGGGAATTGGCACTAATGAGAGACTTAAGATGATCGGAATTTGTGGAATTGGCGGAATAGGTAAAACAACAATTGCACGAGCTGTGCATAACCTGCTTGCTGACCAATTTGATGGGGTGTGTTTTCTTGCGGGCATTAGAGAAAAGACTATTGAAAAGCAAGGCCTTGTACAACTGCAGGAAACACTACTTTCTGAAATACTTGGGGAGAAAGATATTAAGATTGGATGTGTCAATAAAGGGATTCCACTAATAAAAAGGAGGCTCCAAAGAAAGAAAGTCCTTTTGGTTCTCGATGGCGTGGACAATCCTAAGCAGCTAAAGGCAATTGCTGGAGGATATGATTGGTTTGGCTTTGGTAGTCAAATCATTATCACATCCAGAGACAAGCATCTGTTAAGTGCTCACGGGGTGAGAGAGTTTTATGAGGTTGAAGAGTTAAGGAAAAAAAATGCACTTGAATTGTTCAGTTGGAATGCCTTCAAAAGCAACAAAGTTGGTACAGATTATGCAAAAATTTCAAGCTGTGTCCTGTCGTATGCCGGTGGCCTTCCTTTGGCTCTGCAAGTAATTGGCTCCAACTTGTATAATAGAAGCATCAATGAATGGAAGTCTGCGTTAGATAAATATGAAAGAATTCCTAATAAAGAGATTCATGAAATACTTAAGGTAAGTTATGATGGTTTGGAGGAAGATGAGAAGAATATTTTCCTTGACATTGCTTGTTTCTTCAACAAATACAAACTGTCCTATGTCAAATCAATGCTACATGCACGTGGCTTCTACCCAGAACATGGCATTCGAGTTTTGGTTGACAAATCTCTTATGAGTATTGATAGGAATGATTGTCTGAGAATGCATGACTTGATTCAGGACATGGGTAGAGAAATTGTTAGACAGGAATCTACTTCTGAGCCTGGCAAACGTAGTAGATTGTGGTTTGATGGTGGATGTTTTTCATGTGTTGCAAAATGA 1599 0.4028 MAQPAEIPSSSFTGEWTYDVFLSFRGEDTRHSFTGNLYHALDQKGIHTFIDDEGLRKGDEIRPSLLKAIQESRIAIVVFSKNYASSTYCLDKLVTILEHLKKPGRLVWPIFYDVEASDVRHQRGSYAEALAKQEERYQDDKGKVQKWRVALRDAADLSGWNFKPGSQTEYKFIKSIVSVVSKKLNHTPLHVADNPVGLESRVLQVKSIMGIGTNERLKMIGICGIGGIGKTTIARAVHNLLADQFDGVCFLAGIREKTIEKQGLVQLQETLLSEILGEKDIKIGCVNKGIPLIKRRLQRKKVLLVLDGVDNPKQLKAIAGGYDWFGFGSQIIITSRDKHLLSAHGVREFYEVEELRKKNALELFSWNAFKSNKVGTDYAKISSCVLSYAGGLPLALQVIGSNLYNRSINEWKSALDKYERIPNKEIHEILKVSYDGLEEDEKNIFLDIACFFNKYKLSYVKSMLHARGFYPEHGIRVLVDKSLMSIDRNDCLRMHDLIQDMGREIVRQESTSEPGKRSRLWFDGGCFSCVAK 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60509g00014 532 FunFam Disease resistance protein (TIR-NBS-LRR class) 14 186 - -
Stsc60509g00014 532 SUPERFAMILY "Winged helix" DNA-binding domain 424 510 IPR036390 -
Stsc60509g00014 532 PRINTS Disease resistance protein signature 296 310 - -
Stsc60509g00014 532 PRINTS Disease resistance protein signature 219 234 - -
Stsc60509g00014 532 PRINTS Disease resistance protein signature 389 403 - -
Stsc60509g00014 532 SMART AAA_5 216 359 IPR003593 GO:0016887
Stsc60509g00014 532 SMART till_3 17 157 IPR000157 GO:0007165
Stsc60509g00014 532 Pfam TIR domain 18 189 IPR000157 GO:0007165
Stsc60509g00014 532 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 180 448 IPR027417 -
Stsc60509g00014 532 ProSiteProfiles TIR domain profile. 16 180 IPR000157 GO:0007165
Stsc60509g00014 532 Gene3D - 354 438 IPR042197 -
Stsc60509g00014 532 SUPERFAMILY Toll/Interleukin receptor TIR domain 7 160 IPR035897 -
Stsc60509g00014 532 Gene3D - 182 347 IPR027417 -
Stsc60509g00014 532 Pfam NB-ARC domain 217 434 IPR002182 GO:0043531
Stsc60509g00014 532 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 18 523 IPR044974 GO:0006952
Stsc60509g00014 532 Gene3D - 14 181 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60509g00014 Stsc-Chr60509 91567 93288 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60509g00014 196 521 WRKY Transcription Factor Family AT5G45050 40.061 4.62e-62 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60509g00014 - - ahf:112736348 889.026