Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60509g00013 ATGGAAGCAGCTACAACAACTACTACTTCCTCTCAGCCTCGCCAGAGAAGGCTGAAGAGAAAGCGTGCCGCCGCGTTGGCGAGTGACCCCGAACTCGAGCGACTTAACTCGCTGCCTTGGAACCCTACGTTTCCACGAAACAACGACGAAGATGATAACAACAATGGCAACGACCCCTTTGCTATGCTCGCCACTGGCTCCAACGAGCTCGAAGGAGGTTTCCTCTCACTCGAGGAGATCGACGAGGCTGATTACGCTTTTTCCTTTCCTGAACCTCAAACCAATGAGAAGAAGAACCAGAACAAGAAGAAGAGTAAGCTCGATGAGAATGTGAAAGAAGAAGGGAAGAAGGAAGAGGCAGATGCTGGAGTTGGCGGCGGCAGCGAAGGTGGTAGCGATGAGGTTGAAGTGAAGAAAGAAAAGAAAAAGGATAAGAAGAAGAAGAAGAAAAAGAAGACAAAGAAGAATAAGAAGAAGAAGGAGGAGGAGGAGGAGGAGGAGGAGAAGGAAGAGGAAGCGGTTACCGAAAGCCAGAATGTTGAGAAGCCAGATACTGGTAGTATAGATATTGATGCGAAGGATGATGATGTTGTTGGGGAAGAAGACTTTGATGAAACTGAGTTTTATGCATGGAACGAGTTGAGGCTTCATCCTTTGCTGATGAAAGCAATTTACAAGCTTGGTTTCAAGGAACCGACACCAATTCAGAAAGCTTGTGTTCCGGCTGCTGCTCATCAAGGGAAGGATGTTATTGGGGCTGCTGAGACAGGATCTGGTAAAACACTTGCATTCGGTTTGCCCATTTTGCAGCGTATTTTGGAGGAACGAGAGAAGGCTACAAAGATGGAGGAAGAAAGGGGTGAAGAGCCAGAAAAATATGCTCCTACTGGAATTTTGAGGGCTCTCATTATTGCCCCAACCAGAGAGCTTGCTATTCAGGTAACTGATCATCTGAAAGCAGTAGCCAAGTATATTAATGTTAGGGTGACCCCTATTGTTGGAGGCATTTTAGCTGAAAAGCAGGAGAGACTTTTAAAATCAAGGCCTGAGATTGTTGTTGGAACTCCAGGGAGGTTGTGGGAACTTATGTCAGGTGGAGAAAAGCATCTAGTTGAGTTACATTCCTTGTCTTTCTTTGTCCTTGATGAGGCTGATCGAATGGTACAAAACGGTCATTTTAAGGAGTTGCAATCCATAATTGACATGCTTCCCATGTCAAATATCTCCACTGAGGATAATTCTCAACATGCCCAAAATTGTGTTACAGTTTCAAGCTACCAAAGAAAGAAAAGGCAAACTCTTGTGTTTTCAGCTACTGTTGCACTTTCTGCTGATTTTCGCAAGAAGCTTAAGCGTGGTTTAGTGAAACAAAAGCAATCAGTCACAGATGAACTGAATTCTATTGAAACTCTTTCTGAACGAGCTGGAATGAGATCCAATGCTGCAATTATTGATCTTACCAATCCATCAATATTGGCAGCCAAGCTTGAGGAATCATTTATTGAATGCAGGGAAGAAGATAAAGATGCCTACTTATATTATATTTTGACTCTCCATGGACAAGGTCGCACCATAGTTTTCTGTACATCGATTGCAGCTTTGCGCCATATTTCTTCCATACTGCGGATTCTTGGCATTGATGTTTGGACTTTGCATGCACAAATGCAGCAGCGAGCACGTTTAAAGGCCATGGATCGTTTTCGTGAAAATGAAAATGGCATACTTGTTGCTACGGATGTTGCTGCAAGGGGTCTTGATATTCCTGGTGTTAGAACTGTTGTTCATTATCAGCTTCCGCATTCAGCAGAGGTTTATGTTCATAGAAGTGGAAGAACAGCTAGAGCCTCTGCTGAAGGTTGTAGCATTGCTTTAGTCTCACCAAAAGAAACATCAAAGTTTGCTTCGCTGCTCAAATCATTTTCTAAGGACAATTTTCAGCGGTTTCCTTTACAGAACTCATACATGCCAGAGGTTCTAAAACGATTGTCTCTTGCACGCCAGATAGACAAAATAACACGAAAGGATTCACAGGTGAAAGCTGAGAAAAACTGGTTTGATCGAAATGCTAATTCAGTGGAGTTAGTTACTGAAAATGATGACAGTGAGGAGGAACGAGTGAACAAACACAAGCAAATGAAAGCCAGCTCTAAACAATTGAAGACATTGCAGCAGGAGCTCAAAATGTTGATTTCACGTCCTTTACAATCAAATACATTTTCACATCGATATTTAGCAGGGGCTGGTGTCACACCTGTCATGCAGGAACAATTGCTACAATTAGCAAAGCAAAAGCTAAATGATCGCCCGGGCTCAGGAGTAGGCAAGAAGGGGAAATTGGTTGTGATTGGTCAAGATTGTGTTGAAGCACTTCAGGCACTCCGGAATGCTGGTGAAGAGGTGCGCATGGATGTCAAGGATTTTGCTGGAAAACGGAGAAATATAGAAAATCGGAAAAGAAAAAGAAAAGAGGAGAAAAAACGTTTGCGTGATCAGCGAAGAAAGCAGAAGAGAAAGCTAAAACAGGATAATGAATAG 2535 0.4316 MEAATTTTTSSQPRQRRLKRKRAAALASDPELERLNSLPWNPTFPRNNDEDDNNNGNDPFAMLATGSNELEGGFLSLEEIDEADYAFSFPEPQTNEKKNQNKKKSKLDENVKEEGKKEEADAGVGGGSEGGSDEVEVKKEKKKDKKKKKKKKTKKNKKKKEEEEEEEEKEEEAVTESQNVEKPDTGSIDIDAKDDDVVGEEDFDETEFYAWNELRLHPLLMKAIYKLGFKEPTPIQKACVPAAAHQGKDVIGAAETGSGKTLAFGLPILQRILEEREKATKMEEERGEEPEKYAPTGILRALIIAPTRELAIQVTDHLKAVAKYINVRVTPIVGGILAEKQERLLKSRPEIVVGTPGRLWELMSGGEKHLVELHSLSFFVLDEADRMVQNGHFKELQSIIDMLPMSNISTEDNSQHAQNCVTVSSYQRKKRQTLVFSATVALSADFRKKLKRGLVKQKQSVTDELNSIETLSERAGMRSNAAIIDLTNPSILAAKLEESFIECREEDKDAYLYYILTLHGQGRTIVFCTSIAALRHISSILRILGIDVWTLHAQMQQRARLKAMDRFRENENGILVATDVAARGLDIPGVRTVVHYQLPHSAEVYVHRSGRTARASAEGCSIALVSPKETSKFASLLKSFSKDNFQRFPLQNSYMPEVLKRLSLARQIDKITRKDSQVKAEKNWFDRNANSVELVTENDDSEEERVNKHKQMKASSKQLKTLQQELKMLISRPLQSNTFSHRYLAGAGVTPVMQEQLLQLAKQKLNDRPGSGVGKKGKLVVIGQDCVEALQALRNAGEEVRMDVKDFAGKRRNIENRKRKRKEEKKRLRDQRRKQKRKLKQDNE 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60509g00013 844 SMART helicmild6 535 616 IPR001650 -
Stsc60509g00013 844 MobiDBLite consensus disorder prediction 142 156 - -
Stsc60509g00013 844 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 209 237 IPR014014 GO:0003724
Stsc60509g00013 844 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 241 458 IPR014001 -
Stsc60509g00013 844 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 300 632 IPR027417 -
Stsc60509g00013 844 Gene3D - 134 461 IPR027417 -
Stsc60509g00013 844 MobiDBLite consensus disorder prediction 814 836 - -
Stsc60509g00013 844 CDD SF2_C_DEAD 496 625 - -
Stsc60509g00013 844 MobiDBLite consensus disorder prediction 696 718 - -
Stsc60509g00013 844 Pfam DEAD/DEAH box helicase 233 441 IPR011545 GO:0003676|GO:0005524
Stsc60509g00013 844 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 495 656 IPR001650 -
Stsc60509g00013 844 Gene3D - 493 732 IPR027417 -
Stsc60509g00013 844 PANTHER RNA HELICASE 144 815 - -
Stsc60509g00013 844 MobiDBLite consensus disorder prediction 808 844 - -
Stsc60509g00013 844 MobiDBLite consensus disorder prediction 1 66 - -
Stsc60509g00013 844 Coils Coil 712 732 - -
Stsc60509g00013 844 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 380 388 IPR000629 -
Stsc60509g00013 844 CDD DEADc_DDX24 220 485 - -
Stsc60509g00013 844 MobiDBLite consensus disorder prediction 85 196 - -
Stsc60509g00013 844 SMART ultradead3 228 468 IPR014001 -
Stsc60509g00013 844 Pfam Helicase conserved C-terminal domain 507 615 IPR001650 -
Stsc60509g00013 844 MobiDBLite consensus disorder prediction 40 62 - -
Stsc60509g00013 844 Coils Coil 132 180 - -
Stsc60509g00013 844 MobiDBLite consensus disorder prediction 96 123 - -
Stsc60509g00013 844 Coils Coil 811 844 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60509g00013 Stsc-Chr60509 83150 89756 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60509g00013 210 656 Eukaryotic Initiation Factors Gene Family AT5G11200 27.601 4.84e-41 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60509g00013 K14805 - gmx:100806018 1154.43