Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60508g00008 ATGGGCACATTTAGACCTAGTGATTGGGCTCTTGCACATGCTACATTCTACGGTGATGACTCTGCTTCTGCCACCATGGGAGGAGCTTGTGGGTATGGAAACTTGTTTATAAACGGTTATGGGACAGACACAGCAGCATTGAGTTCAACGTTGTTCAACAATGGGTATGCATGTGGCGCTTGTTATCAGATCAAGTGTTACAATTCCACTGCATGTAATCCCAATGTGCCTTACACCACCGTAACCGCCACAAATCTTTGTCCTCCCAATTGGGCCGAGCCCTCTGATAATGGTGGCTGGTGCAACCCACCAAGGGCCCATTTTGACATGTCCAAGCCCGCTTTCATGAAAATTGCACAGTGGACAGCTGGCATTGTCCCTGTTCTCTACCGCAGAGTTGCATGCGGAAGGAGTGGAGGGCTTCGATTCTCATTGCAAGGGAATGGGTATTGGCTTTTGGTGTATGTGATGAATGTGGGAGGTGGTGGAGACATTGGTAGCATGTCTGTCAAAGGTAGCAGAACTTCTTGGATCACCATGACCCACAATTGGGGTGCTTCTTACCAAGCATTTGCTTCTCTTTCTTCACAACCATTATCCTTCAAGATCACTTCTTTCACCACCAAACAGACCATTATTGCTTCCAATGTTGCTCCTTCTAATTGGGCCTTTGGTCTCACTTATTCCACCAATCTCAACTTCCACTGA 708 0.4718 MGTFRPSDWALAHATFYGDDSASATMGGACGYGNLFINGYGTDTAALSSTLFNNGYACGACYQIKCYNSTACNPNVPYTTVTATNLCPPNWAEPSDNGGWCNPPRAHFDMSKPAFMKIAQWTAGIVPVLYRRVACGRSGGLRFSLQGNGYWLLVYVMNVGGGGDIGSMSVKGSRTSWITMTHNWGASYQAFASLSSQPLSFKITSFTTKQTIIASNVAPSNWAFGLTYSTNLNFH 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60508g00008 235 Pfam Lytic transglycolase 44 130 IPR009009 -
Stsc60508g00008 235 PRINTS Expansin/Lol pI family signature 26 44 IPR007118 GO:0005576
Stsc60508g00008 235 PRINTS Expansin/Lol pI family signature 123 139 IPR007118 GO:0005576
Stsc60508g00008 235 PRINTS Expansin/Lol pI family signature 177 191 IPR007118 GO:0005576
Stsc60508g00008 235 PRINTS Expansin/Lol pI family signature 8 23 IPR007118 GO:0005576
Stsc60508g00008 235 PRINTS Expansin/Lol pI family signature 48 66 IPR007118 GO:0005576
Stsc60508g00008 235 PRINTS Expansin/Lol pI family signature 216 230 IPR007118 GO:0005576
Stsc60508g00008 235 SUPERFAMILY Barwin-like endoglucanases 8 158 IPR036908 -
Stsc60508g00008 235 PANTHER EXPANSIN-A15 6 230 IPR002963 GO:0009664
Stsc60508g00008 235 PRINTS Expansin signature 115 128 IPR002963 GO:0009664
Stsc60508g00008 235 PRINTS Expansin signature 151 172 IPR002963 GO:0009664
Stsc60508g00008 235 PRINTS Expansin signature 79 89 IPR002963 GO:0009664
Stsc60508g00008 235 PRINTS Expansin signature 98 115 IPR002963 GO:0009664
Stsc60508g00008 235 PRINTS Expansin signature 139 151 IPR002963 GO:0009664
Stsc60508g00008 235 PRINTS Expansin signature 216 232 IPR002963 GO:0009664
Stsc60508g00008 235 PRINTS Expansin signature 39 53 IPR002963 GO:0009664
Stsc60508g00008 235 Pfam Expansin C-terminal domain 142 219 IPR007117 -
Stsc60508g00008 235 Gene3D - 2 135 IPR036908 -
Stsc60508g00008 235 SUPERFAMILY PHL pollen allergen 137 229 IPR036749 -
Stsc60508g00008 235 SMART dpbb_1 44 130 IPR007112 -
Stsc60508g00008 235 CDD DPBB_EXPA_N 8 135 - -
Stsc60508g00008 235 Gene3D - 140 235 IPR036749 -
Stsc60508g00008 235 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 27 140 IPR007112 -
Stsc60508g00008 235 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 150 230 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60508g00008 Stsc-Chr60508 80755 84511 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60508g00008 1 235 Expansin Gene Family AT1G62980 65.106 2.92e-116 331
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60508g00008 - - lang:109349912 422.935