Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60508g00003 ATGGTTCGGGGGAAAACGCAGATGAAGAGAATAGAGAACGAGACGAGCAGGCAAGTAACATTCTCAAAGAGAAGAAACGGTTTGCTTAAGAAGGCTTTTGAGCTTTCTGTTCTTTGTGATGCTGAAGTTGCTCTCATCATCTTCTCTACCAGAGGCAAACTCTATGAGTTCTCCAGCTCTAGTGTAAACAAAATAGTGGAACGCTATCAAAAGAAGGTGAAGGATCTACATAGCAGCCTCAACACCAAACAAACCCAAGAAAATACACAGCAGGTAAAGGAAGGTGATGATATCAACATCACAAATAAGCTTGAGCAACTAGAAGTTTCTAAAAGAAAGCTTTTGGGAGATGGTTTGGATGCATGCCCCATTGATGAGTTACAACAGATAGAGAATCAGCTTGAACGAAGCTTAACCAAAGTTAGGGCAAGAAAGAACCAATTGTTCAGGGAGCAAATTGAGAAGCTAAAGGAAGAGGAAAAACGCCTTCTTGACGAAAATAGCAGATTGAAAGAGAAGTGGCTTGAACAACAACGGTCTTCAAGCAAACAAGACGTGTTGGCAGTGGGTGAAAGGCGGCCGGCGATGGAGGAAGAAGAGGAAGAGGAGGAAGAGGTGGAGACGGAATTGGAGCTATTCATAGGGCTACCGGAGAGAAGAATGCCTTAA 669 0.4335 MVRGKTQMKRIENETSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSTRGKLYEFSSSSVNKIVERYQKKVKDLHSSLNTKQTQENTQQVKEGDDINITNKLEQLEVSKRKLLGDGLDACPIDELQQIENQLERSLTKVRARKNQLFREQIEKLKEEEKRLLDENSRLKEKWLEQQRSSSKQDVLAVGERRPAMEEEEEEEEEVETELELFIGLPERRMP 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60508g00003 222 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Stsc60508g00003 222 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Stsc60508g00003 222 Coils Coil 124 173 - -
Stsc60508g00003 222 MobiDBLite consensus disorder prediction 174 222 - -
Stsc60508g00003 222 MobiDBLite consensus disorder prediction 196 211 - -
Stsc60508g00003 222 Pfam K-box region 86 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc60508g00003 222 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Stsc60508g00003 222 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Stsc60508g00003 222 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Stsc60508g00003 222 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Stsc60508g00003 222 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Stsc60508g00003 222 ProSiteProfiles K-box domain profile. 90 180 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc60508g00003 222 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 177 - -
Stsc60508g00003 222 FunFam Agamous-like MADS-box protein AGL13 13 79 - -
Stsc60508g00003 222 SUPERFAMILY SRF-like 3 87 IPR036879 GO:0003677|GO:0046983
Stsc60508g00003 222 Coils Coil 196 216 - -
Stsc60508g00003 222 Coils Coil 66 86 - -
Stsc60508g00003 222 Gene3D - 13 96 IPR036879 GO:0003677|GO:0046983
Stsc60508g00003 222 CDD MADS_MEF2_like 3 71 IPR033896 GO:0000977|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60508g00003 Stsc-Chr60508 20060 30113 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60508g00003 1 220 MADS-box Gene Family AT4G22950 57.727 6.47e-81 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Stsc60508g00003 K-box 4.2e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60508g00003 - - adu:107489337 269.24