Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60504g00008 ATGGTAACAATCAAAGCATCTTATGTAGTCACTCCAAAAGAAGAAACTCCAAAGGGTTTTTTCTGCTTAACAGAGTGTGACCAAATCTGTGTTCCGTTTCATACACTTTCACTTTACATTTACAACCCAAAACACAATATCAGTTTCAATGAGCTTGTTCAGAGAATGAGAGAATCCCTTAGCCAGATTCTGGTTCACTACTATCCCTTATGTGGCCGCTTGAATTCTATAGAAGGAGGCCTTTACACACTTGATTGTAACGCAAAGGGAGCCATGCTTTTTGAAGCTGAATCCACAAAATCAATGGATGAATATGGAGACTTCTCACCAAACAATGATAACATCAAAGAACTCATACCAAAGCTTGATTACTCTCAACCCATTCAGGACCTTCCTCTGTTTCTTGCACAGGTCACAAAGTTCCATGGTGGTGATGGCATTGCCATTGGAATTGCCATACATCACACAATAAGTGATGGACATGCAAGCATTCAATTCATCAACTCATGGGCCAAACTCACCAGAGGAGATGCATTGAAACCAGATGAATTGCCATTTCTCGACCGAATGGTGTTTACGGCCTCTAGCCTGCCGGCGTTGCGGCGTTTCGACCACCCGGAGTTTAAGCCTCTGCCACTCATCTTGGGAAGAGCAGATACTAGTGAAGAAGAAAAGAAGAAGGACATAAGGTTTGCATTGTTGAAGCTAACAGCAGAACAGGTGCAGAAACTGAAGCAAAAGGCAAATGCTAATAATAACTCCCAGGAGAGAGCCTACAGCAGATTTGAAGCCATTGGAGCACATATATGGCGATGTGCTTGCATGGCCCGTGAGCTTCACAAAAATCAACCAACCGTGGCAAGGACGGTGGTCGATGTTCGCAACAAGGTGAATCCTCCGTTGCCAAAAAACTATTTTGGGAATGCTTTAAGTATCACCATAACACCAGCATGTCTAGTTGGAGAGATGATATCAAAGCCCCTGAGTTATGCTGCAAAAAGGATAAGAGAAGCGGTGGAAAGGGTTGCAAATGACGAGTACATAAGATCACAGATTGACGTTGTAGCTCGAGGAGAGTATAGAGCATGTATGTTCTTCGTTGGGAGCCCTAACATGGCATTTTTAAGCTGGATGGGAATGCCAGTATATGAAGCAGATTTTGGTTGGGGAAAGCCACATTATTTTGGTCCAGGTGCTGTGTCTCCTGTTGATATTGGGATGATGACTCCAACCCCACATGGGGATGGCTCCATTCTCATCTTCATGCATTTTCAGATGGCGCATATGGATAAGTTCATCAACCTCTTTTGGGATACTTTATGA 1323 0.4346 MVTIKASYVVTPKEETPKGFFCLTECDQICVPFHTLSLYIYNPKHNISFNELVQRMRESLSQILVHYYPLCGRLNSIEGGLYTLDCNAKGAMLFEAESTKSMDEYGDFSPNNDNIKELIPKLDYSQPIQDLPLFLAQVTKFHGGDGIAIGIAIHHTISDGHASIQFINSWAKLTRGDALKPDELPFLDRMVFTASSLPALRRFDHPEFKPLPLILGRADTSEEEKKKDIRFALLKLTAEQVQKLKQKANANNNSQERAYSRFEAIGAHIWRCACMARELHKNQPTVARTVVDVRNKVNPPLPKNYFGNALSITITPACLVGEMISKPLSYAAKRIREAVERVANDEYIRSQIDVVARGEYRACMFFVGSPNMAFLSWMGMPVYEADFGWGKPHYFGPGAVSPVDIGMMTPTPHGDGSILIFMHFQMAHMDKFINLFWDTL 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60504g00008 440 Pfam Transferase family 1 432 - -
Stsc60504g00008 440 Gene3D - 1 210 IPR023213 -
Stsc60504g00008 440 Gene3D - 216 436 IPR023213 -
Stsc60504g00008 440 Coils Coil 238 258 - -
Stsc60504g00008 440 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 10 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60504g00008 Stsc-Chr60504 44198 46793 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60504g00008 2 432 Monolignol Biosynthesis Gene Families AT5G48930 34.389 1.15e-85 267
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60504g00008 K13065 - gmx:100779814 461.455