Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60504g00004 ATGGTAACAATCATAGAATCCTATGTAGTCACTCCTAAAGAAGAAACTCCAAAGGGTGATTTTTTCTTATCAGAGATTGACCAAATCTGTCGTTGGAGTCCTACACCTTCAATCTACATTTACAACAACAACAGCAATCTCAATGTGAATGAGCTTCTTCAAAGAATGAGAGACTCCCTTAGTGAGATTTTGGTTCACTACTATCCTTTATGTGGCAGGTTGAATTGGATACAAGGTGGCCGTTTGAAACTTGATTGTAATGCAAAGGGAGCCATCCTGCTTCAAGCTGAATCCACCAAATCAATGGCTGAATATGGAGATTTCTCACCAAATGATGATAACATCAAAGAACTCGTACCAAAGGTTGATTACTCTCAACCCATTGAAGAGCTTCCTCTGTTTCTCGCACAAGTCACAAAGTTCCATGGTGGTAATGCCATTGCCATTGGAATTGCCATATCTCATCCATTGAGTGATGGGGTTTCAGCCTTTAACTTCATCAACTCATGGGCAAAACTAACCCGGGGAGACTCATTGGACCCAGATGAATTACCATTTCTTGATCGAACGGTGTTCACAACCTCTCGGCTGCCGCGGTCGCGGCGTTTTGACCACCAGGAGTTTAAGCCTCCACCACTCATCCTGGGAAGAACAGACAACATTGAAGAACGGAAGAAGAAGACAAAGTTTGCATTATTGAAGCTCACAGCAGAACAGGTACAGAAATTGAAGCAGAAAGCCAATATTGATAATTCTAGTGAATCCGAGGAGAAACCCTACAGCAGATTTGAAGCCATTGGAGCATATATGTGGCAATGTGCTTGTAAGGCCCATGGGCTTGACAAAGACCAACCAACCAGAGCCAGGACGGTGGTTGATGTTCGTAACAAGGTAAATCCTCCTCTGTCCAAAAACTATTTTGGGAATGTTTTGGCACGGACAGTGACAACAACATGTTATGCCGGAGAAATCACTTCAAAGCCGCTAAGCTATGGTGCACAAAAGATAAGAGAAGCTGTGAAAATGGGTTCGAATGAAGAGTACATAAGATCGCAACTGGAGTTCGTAGCGCAACTAGAGACAATGGATATTATTAGGACTAAGTACAAGGAAAAAGAAGAAAATAGGAGAGCTGATGTTCCATTCTATGGAAACCCCAACATTATGCTTAATAGCTGGGTGAGTATGCCAATGTATGAAGTAGATTTTGGTTTGGGAAAACCAGATTATTTTGGTCCAGGTGCTGTTTATCCCTTGGATTTTGGGATAATAGCTCCAAGCCCACATACCGATGGATCCATTGATATCTTCATGAACTTTCAAATGGCAGACATGCAGAATTTTATCAACATCTTTTGGGATAATTTATGA 1371 0.4179 MVTIIESYVVTPKEETPKGDFFLSEIDQICRWSPTPSIYIYNNNSNLNVNELLQRMRDSLSEILVHYYPLCGRLNWIQGGRLKLDCNAKGAILLQAESTKSMAEYGDFSPNDDNIKELVPKVDYSQPIEELPLFLAQVTKFHGGNAIAIGIAISHPLSDGVSAFNFINSWAKLTRGDSLDPDELPFLDRTVFTTSRLPRSRRFDHQEFKPPPLILGRTDNIEERKKKTKFALLKLTAEQVQKLKQKANIDNSSESEEKPYSRFEAIGAYMWQCACKAHGLDKDQPTRARTVVDVRNKVNPPLSKNYFGNVLARTVTTTCYAGEITSKPLSYGAQKIREAVKMGSNEEYIRSQLEFVAQLETMDIIRTKYKEKEENRRADVPFYGNPNIMLNSWVSMPMYEVDFGLGKPDYFGPGAVYPLDFGIIAPSPHTDGSIDIFMNFQMADMQNFINIFWDNL 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60504g00004 456 Gene3D - 1 210 IPR023213 -
Stsc60504g00004 456 Pfam Transferase family 1 448 - -
Stsc60504g00004 456 Coils Coil 456 456 - -
Stsc60504g00004 456 Gene3D - 217 454 IPR023213 -
Stsc60504g00004 456 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 9 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60504g00004 Stsc-Chr60504 23033 24933 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60504g00004 2 448 Monolignol Biosynthesis Gene Families AT5G48930 33.853 3.25e-82 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60504g00004 K13065 - gmx:100779814 464.922