Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60503g00020 ATGATCAAAGCCCTCACCACTGATGTGGAGGAGTTTTACCGGCAGTGTGATCCAGATAAGGAGAACCTCTGTCTGTATGGATACCCCACTGAACAGTGGGAAGTTAACTTACCAGCTGAAGAAGTTCCTCCTGAACTTCCTGAGCCTGCATTGGGCATTAACTTCGCTAGGGATGGGATGCAAGAGAAGGACTGGCTAACTTTGGTTGCAGTTCACAGTGATGCATGGCTTATTTCTGTGGCTTTCTACTTTGGTGCAAGATTTGGTTTTGACAGAGCTGACAGGAAACGTCTGTTCACTATGATTAATGATCTGCCAACAATTTTTGAGGTTGTGACTGGAACCGCAAAGAAACAGGCTAAGGAAAAGTCATCAGTTTCAAACCACACCAACAACAAATCAAAGTCTAGTTCAAAAGGGCGAGGAACTGAATCAGTTAAGCAAACAAAGCAAGCAAAGGAAGAGGATGAAGGTGCAGAGGAAGATGAGGAGGAGCATGGGGAGACCCTGTGTGGTGCATGTGGGGAGCTCTATGCAGCTGATGAGTTTTGGATTTGCTGCGACATATGCGAGAGGTGGTTCCATGGCAAGTGTGTGAAGATCACGCCTGCTCGGGCTGAGCACATCAAACAGTACAAGTGCCCCACTTGCAGCAACAAGAGAGCACGGCCTTGA 675 0.4741 MIKALTTDVEEFYRQCDPDKENLCLYGYPTEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLTLVAVHSDAWLISVAFYFGARFGFDRADRKRLFTMINDLPTIFEVVTGTAKKQAKEKSSVSNHTNNKSKSSSKGRGTESVKQTKQAKEEDEGAEEDEEEHGETLCGACGELYAADEFWICCDICERWFHGKCVKITPARAEHIKQYKCPTCSNKRARP 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60503g00020 224 ProSitePatterns Zinc finger PHD-type signature. 171 217 IPR019786 -
Stsc60503g00020 224 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 160 219 IPR013083 -
Stsc60503g00020 224 MobiDBLite consensus disorder prediction 120 145 - -
Stsc60503g00020 224 FunFam PHD finger alfin-like protein 163 219 - -
Stsc60503g00020 224 PANTHER CPG BINDING PROTEIN 1 223 IPR045104 GO:0006355|GO:0042393
Stsc60503g00020 224 SMART PHD_3 170 218 IPR001965 -
Stsc60503g00020 224 Pfam Alfin 1 114 IPR021998 GO:0006355|GO:0042393
Stsc60503g00020 224 Pfam PHD-finger 171 220 IPR019787 -
Stsc60503g00020 224 CDD PHD_AL_plant 170 220 IPR044104 -
Stsc60503g00020 224 ProSiteProfiles Zinc finger PHD-type profile. 168 220 IPR019787 -
Stsc60503g00020 224 MobiDBLite consensus disorder prediction 120 164 - -
Stsc60503g00020 224 SUPERFAMILY FYVE/PHD zinc finger 160 221 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60503g00020 Stsc-Chr60503 123902 126769 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60503g00020 1 223 Alfin-like Transcription Factor Family AT3G42790 75.556 2.20e-109 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Stsc60503g00020 Alfin 3.2e-61 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60503g00020 K26274 - rcu:8272513 390.578