Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60503g00013 ATGAAGAAAGGGTGCTTAGGCCCCAATCTGAAGCTTACTCTTCCTCTTCCTCCAACTCATCATCCTTCTTTTCCAACCTTCCTGAATGAAGGCGGCGGGTTTATCGATGAGAATCTGCTTGTCAATGCCGACGGAGTTTTGATCGTTTCTCAGACTGAACTGGGAACTCCACCCCCAGTAAAGGCACTAGACAACCAACTAAGTTTGGCAGACATTGACACAATCAAAGTGATTGGAAAGGGAAATGGAGGGATAGTGCAGTTGGTGCAACACAAATGGACTAATCAGTTTTTCGCATTAAAGGAAATCCGAATGACGATCGAGGAGCCAATGCACAAGCAGATAGCAAGAGAGCTAAAAATTAATCAGTCAGCACAATGTCCATATGTTGTTGTTTACTACCAATCATTCTACAATAATGGGGTCATATCAATCATCTTAGAGTACATGGATGGAGGGTCCTTAGAAGATTTTCTTAGCATAGTCAAAACAATTCCAGAGCCATATCTTGCTGCCATCTGCAAGCAGGTGCTCAAGGGTCTAATTTATCTTCACCATGAGAAACATATTATCCATAGGGACTTAAAGCCTTCCAACTTGTTGATAAATCATAGAGGAGAAGTAAAGATTACTGATTTTGGTGTGAGCGCAATCATGGAAACTACGTCCGGTCTAGCTAATACTTTTATCGGCACATACATCTACATGTCTCCAGAGAGAATTACTGGAAACCCTGGTGGCTACAACTACAGAAGTGATATATGGAGTTTGGGACTGATATTGCTCAAGTGTGCTACAGGGAAGTTTCCGTATACACCGCCTGATAAAAAAGAAGGATGGGAAAATATCTACCAGCTTATTGAAGTCATTGTTGAAAAGCCTCCGCCGAGTGCTCCATCTGATCAGTTTTCTCTCGAGTTTTGTTCATTCATCTCTGCATGA 942 0.4204 MKKGCLGPNLKLTLPLPPTHHPSFPTFLNEGGGFIDENLLVNADGVLIVSQTELGTPPPVKALDNQLSLADIDTIKVIGKGNGGIVQLVQHKWTNQFFALKEIRMTIEEPMHKQIARELKINQSAQCPYVVVYYQSFYNNGVISIILEYMDGGSLEDFLSIVKTIPEPYLAAICKQVLKGLIYLHHEKHIIHRDLKPSNLLINHRGEVKITDFGVSAIMETTSGLANTFIGTYIYMSPERITGNPGGYNYRSDIWSLGLILLKCATGKFPYTPPDKKEGWENIYQLIEVIVEKPPPSAPSDQFSLEFCSFISA 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60503g00013 313 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 65 312 - -
Stsc60503g00013 313 Pfam Protein kinase domain 74 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60503g00013 313 ProSitePatterns Protein kinases ATP-binding region signature. 78 101 IPR017441 GO:0005524
Stsc60503g00013 313 Gene3D Phosphorylase Kinase; domain 1 56 151 - -
Stsc60503g00013 313 ProSitePatterns Serine/Threonine protein kinases active-site signature. 190 202 IPR008271 GO:0004672|GO:0006468
Stsc60503g00013 313 Gene3D Transferase(Phosphotransferase) domain 1 152 313 - -
Stsc60503g00013 313 ProSiteProfiles Protein kinase domain profile. 72 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60503g00013 313 SMART serkin_6 72 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60503g00013 313 SUPERFAMILY Protein kinase-like (PK-like) 69 311 IPR011009 -
Stsc60503g00013 313 CDD PKc_MAPKK_plant_like 70 313 - -
Stsc60503g00013 313 FunFam Mitogen-activated protein kinase kinase 1 56 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60503g00013 Stsc-Chr60503 68724 72364 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60503g00013 1 312 MAP Kinase Kinase Gene Family AT4G29810 62.305 1.45e-144 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Stsc60503g00013 Pkinase 2.5e-58 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60503g00013 K20603 - qsa:O6P43_002713 473.011