Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60503g00012 ATGGAGGAAATTACTTCGACGGTTGCGGTGCCATTCAGGCTTGGGAATTTGATTCAGAAAGAGTCAACGGTGGCAACCCGCATGGAGATAACTGGTCTGAAGTTCATGGCAAACACAGCAGCTTTGATATTAAATCCCACAATTGAAGGTCATCATCAATCTTACTCTGTTGGAACTGAAGACATCTGCAAAGATATAAGTCTAAAACACCAAACTAAATCATCTGCAGAGGTAAAGGCGAAACAGGGTCGACCCAACTCAGCTCCCATTACATCAGAAATGCTTACTGAATTTAACATGAAAGAAGAATTCATGTCAGCTAATGGTTTTCACTCTGTACATAATCAAAGTTCTGAATCCGTTGCCAGTGACAAAAGTTGTCCTGGGAATGAAGCTGCTACTTTGACAGATAATTGTTCTGATTCTGATAATGATTTGCCAATTGCCATCAAGTTTAATACTAATATCCACGGAAAGTCCAGTTCGATCGAGCTGAGTGCAGAGCTGGGGCCTGTGCAGAACATGCTTTCTGCTGCTATGGAACTTGAAACTGAAGGAAGCGGATCGGACGGATTTGATAAAAAACCATCTGTCACTCTTCATGATGTGTCAGACAAGCAAACAAGCATAGCAGATTTCCAGAACGCATCAGAACCGAATGGAGGTCCTCTTTGGGGCTTCTCGTCAGTGTGCGGAAGGAGACAAGAGATGGAAGATGCTGTTGCTTGTCAGCCTCAACTTCTTCAAGTTCCTTCACAGATGCTAGCAGATGACCATGTTAATGAAAATGGAAACTCGTCAGCCCACTTTTTCGGTGTCTATGATGGACATGGCGGTTGTCAGGTGGCCAATTACTGCCGGGAACATCTTCACTCGGTGTTGACCGAGGAGATAGAAGCTGCAAAATCTAGTTTGTCTGACAACAATGGGAGGGAGAACTGGCAAGACTATTGGAAGAAAGCATTCTCTAATTGTTTTCATAAAGTAGATGATGCAGTAGGACGAGTCGGGGCACCAGATGATGAAAGCCATTGTGATGGATCCGAGTGTAGTATTGAACCTCTTACTCCTGAGACTGCAGGCTCTACTGCAGTGGTTGCTATTTTAACTCAAACCCACATTATAGTTGCAAATTGTGGTGATTCAAGAGCAGTTCTATGTCGCGGAAAAGAAGCCATGCCATTATCTACTGATCACAAACCAAATAGAGAGGATGAATGGGAAAGGATAGAAGCTGCTGGAGGAAGGGTCATACAGTGGAATGGTTTCCGAGTTCTTGGAGTTTTGGCAGTTTCAAGATCCATAGGTATGTGTACTTGTGCTTTATTGATTTAA 1335 0.4337 MEEITSTVAVPFRLGNLIQKESTVATRMEITGLKFMANTAALILNPTIEGHHQSYSVGTEDICKDISLKHQTKSSAEVKAKQGRPNSAPITSEMLTEFNMKEEFMSANGFHSVHNQSSESVASDKSCPGNEAATLTDNCSDSDNDLPIAIKFNTNIHGKSSSIELSAELGPVQNMLSAAMELETEGSGSDGFDKKPSVTLHDVSDKQTSIADFQNASEPNGGPLWGFSSVCGRRQEMEDAVACQPQLLQVPSQMLADDHVNENGNSSAHFFGVYDGHGGCQVANYCREHLHSVLTEEIEAAKSSLSDNNGRENWQDYWKKAFSNCFHKVDDAVGRVGAPDDESHCDGSECSIEPLTPETAGSTAVVAILTQTHIIVANCGDSRAVLCRGKEAMPLSTDHKPNREDEWERIEAAGGRVIQWNGFRVLGVLAVSRSIGMCTCALLI 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60503g00012 444 SMART PP2C_4 214 444 IPR001932 -
Stsc60503g00012 444 SUPERFAMILY PP2C-like 222 439 IPR036457 -
Stsc60503g00012 444 ProSiteProfiles PPM-type phosphatase domain profile. 224 444 IPR001932 -
Stsc60503g00012 444 Pfam Protein phosphatase 2C 226 436 IPR001932 -
Stsc60503g00012 444 CDD PP2Cc 226 436 IPR001932 -
Stsc60503g00012 444 MobiDBLite consensus disorder prediction 115 140 - -
Stsc60503g00012 444 Gene3D - 214 440 IPR036457 -
Stsc60503g00012 444 ProSitePatterns PPM-type phosphatase domain signature. 270 278 IPR000222 GO:0043169
Stsc60503g00012 444 PANTHER PROTEIN PHOSPHATASE 168 436 IPR015655 GO:0004722|GO:0006470
Stsc60503g00012 444 FunFam Protein phosphatase 2C 50 222 441 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60503g00012 Stsc-Chr60503 65203 68136 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60503g00012 185 436 PP2C-type Phosphatase Gene Family AT5G57050 51.575 2.59e-77 241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60503g00012 K14497 - gmx:100802159 432.95