Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60502g00012 ATGGCTCCCTTCTTATTCGAACCCCAAAGCGACGAAGAGTTCGAACACTCCGAAGAAGAAGAAGAAGAAGAATCATCCGAACCAGGATCCGAACCAGAAGAATCAGAAGGAGAAGAACAAGAAGAAGCTTCTAGAATCTCAAAGGAGAAGAAGAAGACGAAGAAGAAAACACAGTCTCCTTGGGACTTCGCCAAGTACACTGAGTCAGTTGCGGAGGAGCACGCTCGCCGGAGTACAACCTCCGTCGACGAAAAAATCTCCAAAGCACTGAAACAGCGCTCAACGCCTCTCGCGCTTCCTTCACAAAACGACGACGTTGACAACTCATCAGACTCCGAACCTGATAAACAGGAAGATTATAGACCAGATGAAGAAGATGAAGAGGAGGGCAATGTTGGTGATACCAAGTCCTTTTTCGCTCCTTCTGATGGAGCATCTTTCCATGCCGATTCGTTCATGCAGCTTCATTTGTCGCGGCCTTTGCTCAGGGCTTGTGAGGCCTTGGGGTATGCTAAACCAACACCAATTCAGGCAGCTTGTATACCATTGGCGTTGAATGGTCGTGATATATGTGGAAGTGCCATTACTGGGTCAGGAAAGACAGCTGCATTTGCACTTCCCACATTAGAGAGGTTATTGTTCCGTCCTAAACGCATGCATGCAATAAGGGTTCTTATTCTTACACCAACCAGAGAGTTGGCAGTCCAAGTTCACAGTATGATAGAGAAGCTTGCACAATTTACTGACATTAGATGTTGCCTGGTTGTTGGGGGTTTGTCAACGAAGGTGCAAGAAGCAGCTTTGAGATCAATGCCAGACATTGTTGTTGCTACCCCAGGACGTATGATAGACCATTTACGTAATTCTATGTCAGTGGATTTGGATGATCTTGCTGTGCTAATCCTTGATGAGGCAGATCGTCTTTTAGAGCTTGGATTTAGTGCTGAAATTCATGAACTTGTTCGCATGTGTCCCAAGAAAAGGCAGACAATGTTGTTCTCAGCAACAATGACTGAGGAGGTTAATGAGCTTATTAAGCTGTCGCTAACAAAACCCGTCCGTCTTTCTGCTGATCCATCTGCTAAACGGCCTGCAGCCTTGACTGAGGAGGTAGTTAGAATACGAAGATTACGTGAAGCAAATCAGGAAGCAGTTCTTCTTGCAATGTGCTCCAAAACCTTTACTTCTAAAGTGATTGTCTTCAGTGGAACAAAGCAAGCTGCACATAGGTTGAAGATTATATTTGGATTAGCTGGTCTGAAAGCTGCTGAGCTTCATGGAAATCTTACTCAAGCCCAGCGCCTTGAAGCTTTGGAACAATTCAGGAAGCAAGAAGTTGACTTCTTGATTGCAACTGATGTGGCTGCTCGTGGGCTTGACATCATAGGTGTTCAAACAGTTATCAACTATGCATGTCCCCGCGATCTTACCAGCTATGTTCATCGAGTGGGTCGTACAGCCAGAGCTGGCAGAGAAGGATGCGCCGTCACATTTGTGACTGATAATGACCGGTCACTTCTAAAAGCAATTGCAAAGAGGGCTGGTTCAAAGCTGAAGAGTCGAATTGTAGCCGAGCAATCCATACTTAAATGGTCTCATATAATTGATCAATTGGAGGATCAAGTTGCAGAAGTACTTGAAGAAGAGAGGGAAGAAAGAGCCCTAAGAAAAGCTGAAATGGAGGCCACAAAGGCTGAAAACATGATTGCTCATAAGGAAGAGATCTTTTCCCGCCCAAAAAGAACCTGGTTTGTAACAGAGACGGAAAAGAAGGTTGCTGCAAAAGCAGCAAAGGCATCCATTAATAACGAGAAGAGCTCTAGAAAGGTAATAAGTGCTCAGGAAGCTGAAGACCTCAAAATGAAGGAAAAGAGGAAGCGGGAGCGAGAGAAAAATTTGCCAAGGAAGAAACGTAGAAAATTGGAAGCGGCTAGAGAGATGTTGGAAGATGAAGGAGATGATGACGAACCAGAAGCTAAGGGGGCAAATAAGAAAGAAAAGGGTGGACTTTCACTTGTTGATGTTGCTTATCGACGAGCAAAAGCAGTAAAGGCTGTGAAGAAGGCAATGGATTCAGGCAAGATCGTGAAGAAGAACAAAAAGAGTACTGATCGTCCTTCACATAAGTCGGTGTCTTCAAGGACAGAGGAGATGCGGGAGCTATTCCAGGCTGACATGAAGGACAAAAAGCCGAAAAGAAGAGGTGCCGGAGCAGGAAAGAAATCCAAGAGTTCGTTCAAAAGCAAGTCAAGGTACAAGCGCAGGTAG 2268 0.4511 MAPFLFEPQSDEEFEHSEEEEEEESSEPGSEPEESEGEEQEEASRISKEKKKTKKKTQSPWDFAKYTESVAEEHARRSTTSVDEKISKALKQRSTPLALPSQNDDVDNSSDSEPDKQEDYRPDEEDEEEGNVGDTKSFFAPSDGASFHADSFMQLHLSRPLLRACEALGYAKPTPIQAACIPLALNGRDICGSAITGSGKTAAFALPTLERLLFRPKRMHAIRVLILTPTRELAVQVHSMIEKLAQFTDIRCCLVVGGLSTKVQEAALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRMCPKKRQTMLFSATMTEEVNELIKLSLTKPVRLSADPSAKRPAALTEEVVRIRRLREANQEAVLLAMCSKTFTSKVIVFSGTKQAAHRLKIIFGLAGLKAAELHGNLTQAQRLEALEQFRKQEVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGCAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSILKWSHIIDQLEDQVAEVLEEEREERALRKAEMEATKAENMIAHKEEIFSRPKRTWFVTETEKKVAAKAAKASINNEKSSRKVISAQEAEDLKMKEKRKREREKNLPRKKRRKLEAAREMLEDEGDDDEPEAKGANKKEKGGLSLVDVAYRRAKAVKAVKKAMDSGKIVKKNKKSTDRPSHKSVSSRTEEMRELFQADMKDKKPKRRGAGAGKKSKSSFKSKSRYKRR 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60502g00012 755 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 150 178 IPR014014 GO:0003724
Stsc60502g00012 755 MobiDBLite consensus disorder prediction 12 40 - -
Stsc60502g00012 755 Coils Coil 528 575 - -
Stsc60502g00012 755 MobiDBLite consensus disorder prediction 55 90 - -
Stsc60502g00012 755 MobiDBLite consensus disorder prediction 610 628 - -
Stsc60502g00012 755 MobiDBLite consensus disorder prediction 680 732 - -
Stsc60502g00012 755 SMART helicmild6 405 490 IPR001650 -
Stsc60502g00012 755 Coils Coil 613 633 - -
Stsc60502g00012 755 CDD DEADc_DDX27 161 356 - -
Stsc60502g00012 755 SMART ultradead3 169 370 IPR014001 -
Stsc60502g00012 755 Gene3D - 114 357 IPR027417 -
Stsc60502g00012 755 Gene3D - 367 568 IPR027417 -
Stsc60502g00012 755 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 385 529 IPR001650 -
Stsc60502g00012 755 Pfam Helicase conserved C-terminal domain 387 490 IPR001650 -
Stsc60502g00012 755 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 181 355 IPR014001 -
Stsc60502g00012 755 MobiDBLite consensus disorder prediction 1 139 - -
Stsc60502g00012 755 MobiDBLite consensus disorder prediction 733 755 - -
Stsc60502g00012 755 Pfam DEAD/DEAH box helicase 174 344 IPR011545 GO:0003676|GO:0005524
Stsc60502g00012 755 MobiDBLite consensus disorder prediction 598 755 - -
Stsc60502g00012 755 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 36 704 - -
Stsc60502g00012 755 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 222 510 IPR027417 -
Stsc60502g00012 755 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 301 309 IPR000629 -
Stsc60502g00012 755 CDD SF2_C_DEAD 367 499 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60502g00012 Stsc-Chr60502 111898 118431 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60502g00012 138 507 Eukaryotic Initiation Factors Gene Family AT3G13920 32.976 1.17e-51 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60502g00012 K13181 - gmx:100791233 1023.85