Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc60502g00012 | ATGGCTCCCTTCTTATTCGAACCCCAAAGCGACGAAGAGTTCGAACACTCCGAAGAAGAAGAAGAAGAAGAATCATCCGAACCAGGATCCGAACCAGAAGAATCAGAAGGAGAAGAACAAGAAGAAGCTTCTAGAATCTCAAAGGAGAAGAAGAAGACGAAGAAGAAAACACAGTCTCCTTGGGACTTCGCCAAGTACACTGAGTCAGTTGCGGAGGAGCACGCTCGCCGGAGTACAACCTCCGTCGACGAAAAAATCTCCAAAGCACTGAAACAGCGCTCAACGCCTCTCGCGCTTCCTTCACAAAACGACGACGTTGACAACTCATCAGACTCCGAACCTGATAAACAGGAAGATTATAGACCAGATGAAGAAGATGAAGAGGAGGGCAATGTTGGTGATACCAAGTCCTTTTTCGCTCCTTCTGATGGAGCATCTTTCCATGCCGATTCGTTCATGCAGCTTCATTTGTCGCGGCCTTTGCTCAGGGCTTGTGAGGCCTTGGGGTATGCTAAACCAACACCAATTCAGGCAGCTTGTATACCATTGGCGTTGAATGGTCGTGATATATGTGGAAGTGCCATTACTGGGTCAGGAAAGACAGCTGCATTTGCACTTCCCACATTAGAGAGGTTATTGTTCCGTCCTAAACGCATGCATGCAATAAGGGTTCTTATTCTTACACCAACCAGAGAGTTGGCAGTCCAAGTTCACAGTATGATAGAGAAGCTTGCACAATTTACTGACATTAGATGTTGCCTGGTTGTTGGGGGTTTGTCAACGAAGGTGCAAGAAGCAGCTTTGAGATCAATGCCAGACATTGTTGTTGCTACCCCAGGACGTATGATAGACCATTTACGTAATTCTATGTCAGTGGATTTGGATGATCTTGCTGTGCTAATCCTTGATGAGGCAGATCGTCTTTTAGAGCTTGGATTTAGTGCTGAAATTCATGAACTTGTTCGCATGTGTCCCAAGAAAAGGCAGACAATGTTGTTCTCAGCAACAATGACTGAGGAGGTTAATGAGCTTATTAAGCTGTCGCTAACAAAACCCGTCCGTCTTTCTGCTGATCCATCTGCTAAACGGCCTGCAGCCTTGACTGAGGAGGTAGTTAGAATACGAAGATTACGTGAAGCAAATCAGGAAGCAGTTCTTCTTGCAATGTGCTCCAAAACCTTTACTTCTAAAGTGATTGTCTTCAGTGGAACAAAGCAAGCTGCACATAGGTTGAAGATTATATTTGGATTAGCTGGTCTGAAAGCTGCTGAGCTTCATGGAAATCTTACTCAAGCCCAGCGCCTTGAAGCTTTGGAACAATTCAGGAAGCAAGAAGTTGACTTCTTGATTGCAACTGATGTGGCTGCTCGTGGGCTTGACATCATAGGTGTTCAAACAGTTATCAACTATGCATGTCCCCGCGATCTTACCAGCTATGTTCATCGAGTGGGTCGTACAGCCAGAGCTGGCAGAGAAGGATGCGCCGTCACATTTGTGACTGATAATGACCGGTCACTTCTAAAAGCAATTGCAAAGAGGGCTGGTTCAAAGCTGAAGAGTCGAATTGTAGCCGAGCAATCCATACTTAAATGGTCTCATATAATTGATCAATTGGAGGATCAAGTTGCAGAAGTACTTGAAGAAGAGAGGGAAGAAAGAGCCCTAAGAAAAGCTGAAATGGAGGCCACAAAGGCTGAAAACATGATTGCTCATAAGGAAGAGATCTTTTCCCGCCCAAAAAGAACCTGGTTTGTAACAGAGACGGAAAAGAAGGTTGCTGCAAAAGCAGCAAAGGCATCCATTAATAACGAGAAGAGCTCTAGAAAGGTAATAAGTGCTCAGGAAGCTGAAGACCTCAAAATGAAGGAAAAGAGGAAGCGGGAGCGAGAGAAAAATTTGCCAAGGAAGAAACGTAGAAAATTGGAAGCGGCTAGAGAGATGTTGGAAGATGAAGGAGATGATGACGAACCAGAAGCTAAGGGGGCAAATAAGAAAGAAAAGGGTGGACTTTCACTTGTTGATGTTGCTTATCGACGAGCAAAAGCAGTAAAGGCTGTGAAGAAGGCAATGGATTCAGGCAAGATCGTGAAGAAGAACAAAAAGAGTACTGATCGTCCTTCACATAAGTCGGTGTCTTCAAGGACAGAGGAGATGCGGGAGCTATTCCAGGCTGACATGAAGGACAAAAAGCCGAAAAGAAGAGGTGCCGGAGCAGGAAAGAAATCCAAGAGTTCGTTCAAAAGCAAGTCAAGGTACAAGCGCAGGTAG | 2268 | 0.4511 | MAPFLFEPQSDEEFEHSEEEEEEESSEPGSEPEESEGEEQEEASRISKEKKKTKKKTQSPWDFAKYTESVAEEHARRSTTSVDEKISKALKQRSTPLALPSQNDDVDNSSDSEPDKQEDYRPDEEDEEEGNVGDTKSFFAPSDGASFHADSFMQLHLSRPLLRACEALGYAKPTPIQAACIPLALNGRDICGSAITGSGKTAAFALPTLERLLFRPKRMHAIRVLILTPTRELAVQVHSMIEKLAQFTDIRCCLVVGGLSTKVQEAALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRMCPKKRQTMLFSATMTEEVNELIKLSLTKPVRLSADPSAKRPAALTEEVVRIRRLREANQEAVLLAMCSKTFTSKVIVFSGTKQAAHRLKIIFGLAGLKAAELHGNLTQAQRLEALEQFRKQEVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGCAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSILKWSHIIDQLEDQVAEVLEEEREERALRKAEMEATKAENMIAHKEEIFSRPKRTWFVTETEKKVAAKAAKASINNEKSSRKVISAQEAEDLKMKEKRKREREKNLPRKKRRKLEAAREMLEDEGDDDEPEAKGANKKEKGGLSLVDVAYRRAKAVKAVKKAMDSGKIVKKNKKSTDRPSHKSVSSRTEEMRELFQADMKDKKPKRRGAGAGKKSKSSFKSKSRYKRR | 755 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc60502g00012 | 755 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 150 | 178 | IPR014014 | GO:0003724 | |
Stsc60502g00012 | 755 | MobiDBLite | consensus disorder prediction | 12 | 40 | - | - | |
Stsc60502g00012 | 755 | Coils | Coil | 528 | 575 | - | - | |
Stsc60502g00012 | 755 | MobiDBLite | consensus disorder prediction | 55 | 90 | - | - | |
Stsc60502g00012 | 755 | MobiDBLite | consensus disorder prediction | 610 | 628 | - | - | |
Stsc60502g00012 | 755 | MobiDBLite | consensus disorder prediction | 680 | 732 | - | - | |
Stsc60502g00012 | 755 | SMART | helicmild6 | 405 | 490 | IPR001650 | - | |
Stsc60502g00012 | 755 | Coils | Coil | 613 | 633 | - | - | |
Stsc60502g00012 | 755 | CDD | DEADc_DDX27 | 161 | 356 | - | - | |
Stsc60502g00012 | 755 | SMART | ultradead3 | 169 | 370 | IPR014001 | - | |
Stsc60502g00012 | 755 | Gene3D | - | 114 | 357 | IPR027417 | - | |
Stsc60502g00012 | 755 | Gene3D | - | 367 | 568 | IPR027417 | - | |
Stsc60502g00012 | 755 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 385 | 529 | IPR001650 | - | |
Stsc60502g00012 | 755 | Pfam | Helicase conserved C-terminal domain | 387 | 490 | IPR001650 | - | |
Stsc60502g00012 | 755 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 181 | 355 | IPR014001 | - | |
Stsc60502g00012 | 755 | MobiDBLite | consensus disorder prediction | 1 | 139 | - | - | |
Stsc60502g00012 | 755 | MobiDBLite | consensus disorder prediction | 733 | 755 | - | - | |
Stsc60502g00012 | 755 | Pfam | DEAD/DEAH box helicase | 174 | 344 | IPR011545 | GO:0003676|GO:0005524 | |
Stsc60502g00012 | 755 | MobiDBLite | consensus disorder prediction | 598 | 755 | - | - | |
Stsc60502g00012 | 755 | PANTHER | ATP-DEPENDENT RNA HELICASE RHLE-RELATED | 36 | 704 | - | - | |
Stsc60502g00012 | 755 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 222 | 510 | IPR027417 | - | |
Stsc60502g00012 | 755 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 301 | 309 | IPR000629 | - | |
Stsc60502g00012 | 755 | CDD | SF2_C_DEAD | 367 | 499 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc60502g00012 | Stsc-Chr60502 | 111898 | 118431 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Stsc60502g00012 | 138 | 507 | Eukaryotic Initiation Factors Gene Family | AT3G13920 | 32.976 | 1.17e-51 | 184 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc60502g00012 | K13181 | - | gmx:100791233 | 1023.85 |