Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60502g00011 ATGAGTTGCTTTGCATGGTGTAATACATCAGACCCAAGGATTAAGAGGTCATTGAGAAGGAGCATTAGGGATTACAATAATGCAGAAAAATCTCTAGCAGCATTTGGCAACTTCTCTTTCAGAACTGATAGTGGCAAGAGGAAATTTATAGAGGAGATAACAAAACTTGGAAAGGGGAATATTACCTCAAAATCTTTTTCATATAAAGAACTTTGTGCTGCAACTCAGAATTTTCACCCTTCCAATGTGATTGGTGAAGGAGGCTTTGGTAGAGTATACAAAGGATACCTTAAAAGCACAGACCAAGTTGTTGCTGTGAAGCAACTTGACAGGAATGGATTTCAAGGAAATAGGGAATTTTTTGTTGAGGTTTTGGTTTTGAGTCTTTTGAAACACCCTAACCTTGTGAACTTGGTAGGGTATTGTATTGAAGGAGAACAAAGGATTTTGGTGTATGAATACATGGCTAATGGTTCTTTAGAAGATCATTTACTTGATATAGAATCAGACAAAACACCATTGGATTGGCAAACTAGAATAAAAATTGCAGAAGGTGCGGCGAAAGGACTCGAATACTTGCACGAAATAGCGAATCCTCCGGTGATATATCGTGATTTCAAAGCATCAAATATTCTGTTGGACGAAAATTTCAATCCGAAACTATCTGATTTTGGACTAGCAAAGATTGGTAATATTGGAGATGAAAAGTCACCTGTATCCACAAGGGTCATGGGAACCTATGGCTATTGCGCACCTGAGTATGCATCCACAGGACAAATAACTATAAAATCAGATGTCTACAGTTTTGGAGTCGTGTTTTTAGAAATGATCACAGGAAGAAGAGTCATTGATAACTCGCGAAAAACAGAGGAAGCAAACTTAGTCCTTTGGGCACAACCACTTCTAAGAGACAGAAGAAAATTTATACAAATAGCAGATCCATTGTTAGAAGATAAATACCCCATAAAGGGTTTATACCAAGCTCTAGCAATAGCAGCAATGTGTCTACAAGAGGAAGCTGAAACAAGGCCATGGATTAGTGATGTGGTTACAGCTCTTGCATTTTTAGCAAGGAAGAAGAGTGATGAAGACACTTCCTCCCCAAATGAGAATTCTACTCAAGGTGGTGGACATAGTTTTGGAAACAACAAATCTAATAATGGCCTAAACGACGGCGAAAATGGCGAAAAAAACCACGACAAAGACGAAAACAAGTGA 1218 0.3834 MSCFAWCNTSDPRIKRSLRRSIRDYNNAEKSLAAFGNFSFRTDSGKRKFIEEITKLGKGNITSKSFSYKELCAATQNFHPSNVIGEGGFGRVYKGYLKSTDQVVAVKQLDRNGFQGNREFFVEVLVLSLLKHPNLVNLVGYCIEGEQRILVYEYMANGSLEDHLLDIESDKTPLDWQTRIKIAEGAAKGLEYLHEIANPPVIYRDFKASNILLDENFNPKLSDFGLAKIGNIGDEKSPVSTRVMGTYGYCAPEYASTGQITIKSDVYSFGVVFLEMITGRRVIDNSRKTEEANLVLWAQPLLRDRRKFIQIADPLLEDKYPIKGLYQALAIAAMCLQEEAETRPWISDVVTALAFLARKKSDEDTSSPNENSTQGGGHSFGNNKSNNGLNDGENGEKNHDKDENK 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60502g00011 405 ProSitePatterns Protein kinases ATP-binding region signature. 84 107 IPR017441 GO:0005524
Stsc60502g00011 405 ProSiteProfiles Protein kinase domain profile. 78 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60502g00011 405 Pfam Protein kinase domain 79 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60502g00011 405 Gene3D Transferase(Phosphotransferase) domain 1 155 377 - -
Stsc60502g00011 405 ProSitePatterns Serine/Threonine protein kinases active-site signature. 201 213 IPR008271 GO:0004672|GO:0006468
Stsc60502g00011 405 CDD STKc_IRAK 84 353 - -
Stsc60502g00011 405 FunFam Serine/threonine-protein kinase PBS1 155 372 - -
Stsc60502g00011 405 SUPERFAMILY Protein kinase-like (PK-like) 62 354 IPR011009 -
Stsc60502g00011 405 Gene3D Phosphorylase Kinase; domain 1 39 154 - -
Stsc60502g00011 405 MobiDBLite consensus disorder prediction 360 405 - -
Stsc60502g00011 405 FunFam probable serine/threonine-protein kinase RLCKVII 44 154 - -
Stsc60502g00011 405 MobiDBLite consensus disorder prediction 367 392 - -
Stsc60502g00011 405 PANTHER OS07G0668900 PROTEIN 45 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60502g00011 Stsc-Chr60502 87938 90626 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60502g00011 60 356 Glycoside Hydrolase AT3G07070 68.350 1.35e-150 431
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Stsc60502g00011 Pkinase 1.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60502g00011 - - gmx:100790474 578.556