Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60502g00005 ATGGCGTCCTCCGAAGCTTTCACTGACAAGAACACGGTGTTCAGAAAACTCAAGGCCAAGTCTGAAAACAAGATGTGTTTCGATTGCAATGCGAAGAATCCAACTTGGGCGTCGGTTACGTATGGCGTCTTCCTATGCATTGATTGCTCCGCTGTTCATCGCAGCCTCGGAGTGCATATCAGCTTCGTGAGATCTACAAATTTAGATTCATGGAGTCCTGAGCAACTAAAAATGATGAGCTTTGGAGGAAACAATCGTGCACAGGTTTTCTTTAAACAACATGGTTGGAATGATGGTGGCAAAATAGAAGCGAAGTATACATCCAGAGCTGCGGATATGTATAGACAAATTCTTTCAAAGGAAGTAGCTAAAAGTATGGCCGAGGAGGGAACTGGGCCATCATCACCTGTTGCTTCTCAGTCGTCTCAAGGGGCTAATGGACTTAGTGAAGTCCAGACCAGTGGAGAAACAAAAGGAAACAAATCAGGTAAACCAGAAAAGCCTGAGAGCACTTCTTCACCCCGTGCTTCACATACACATACAGTAGTTTCAAGTGTGGTCAAGAAGCCTATTGGTGCTAAAAAATCTGGGAAAACTGGGGGACTTGGTGCCCGTAAGCTTACTAAAAAGCCAAGTGAATCTCTCTATGAACAGACGCCTGAAGAACCACCTGCTCCAGTTCCATCTGTCACAAACAATAATGTGCTCGCTCCATCTATAGCATCACGATTTGAGTATGTTGAAAATGTCCAATCATCTGAGGTAAACACTGGAGGTTCTCAGGTAATTGGTCATGTTGCTCCGCCGAAGTCATCAAGCTTCTTTTCTGACTTCGGAATGGATAGTGGCTTTTCAAAGAAATCTGGGCCTAGCTCCTCGAAAGTGCAAATTGAGGAAACAGATGAAGCCAGAAAGAAGTTCTCGAATGCAAAATCCATTTCTTCATCCCAATTTTTTGGAGATCAGAACAGTGCTGCTGATGTGGATGCTAAGGTTACTTTGTCAAAGTTTTCGGGTTCAAGTGCGATCTCTAGTGCTGATCTTTTTGGCGACTCAAGAGACAATTCCGGAGCTGATGTTTCTGCTAGCGACCTCATCAATCGATTATCTTTCCAGGCGCAACAAGATATCTCCTCGCTTAAAAACATCGCCGGAGAGACTGGAAAGAAGCTTACCTCATTGGCATCCAATTTGATGATGGATCTTCAAGATCGAATCCTTTAG 1224 0.4412 MASSEAFTDKNTVFRKLKAKSENKMCFDCNAKNPTWASVTYGVFLCIDCSAVHRSLGVHISFVRSTNLDSWSPEQLKMMSFGGNNRAQVFFKQHGWNDGGKIEAKYTSRAADMYRQILSKEVAKSMAEEGTGPSSPVASQSSQGANGLSEVQTSGETKGNKSGKPEKPESTSSPRASHTHTVVSSVVKKPIGAKKSGKTGGLGARKLTKKPSESLYEQTPEEPPAPVPSVTNNNVLAPSIASRFEYVENVQSSEVNTGGSQVIGHVAPPKSSSFFSDFGMDSGFSKKSGPSSSKVQIEETDEARKKFSNAKSISSSQFFGDQNSAADVDAKVTLSKFSGSSAISSADLFGDSRDNSGADVSASDLINRLSFQAQQDISSLKNIAGETGKKLTSLASNLMMDLQDRIL 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60502g00005 407 Pfam Putative GTPase activating protein for Arf 12 114 IPR001164 GO:0005096
Stsc60502g00005 407 SMART arf_gap_3 11 127 IPR001164 GO:0005096
Stsc60502g00005 407 Gene3D Arf GTPase activating protein 1 142 IPR038508 -
Stsc60502g00005 407 FunFam ADP-ribosylation factor GTPase-activating protein AGD10 2 138 - -
Stsc60502g00005 407 PRINTS HIV Rev interacting protein signature 42 59 IPR001164 GO:0005096
Stsc60502g00005 407 PRINTS HIV Rev interacting protein signature 23 42 IPR001164 GO:0005096
Stsc60502g00005 407 PRINTS HIV Rev interacting protein signature 63 84 IPR001164 GO:0005096
Stsc60502g00005 407 PANTHER ADP-RIBOSYLATION FACTOR GTPASE ACTIVATING PROTEIN 3, ISOFORM H-RELATED 6 407 - -
Stsc60502g00005 407 SUPERFAMILY ArfGap/RecO-like zinc finger 12 126 IPR037278 -
Stsc60502g00005 407 CDD ArfGap_ArfGap2_3_like 9 124 - -
Stsc60502g00005 407 MobiDBLite consensus disorder prediction 132 159 - -
Stsc60502g00005 407 ProSiteProfiles ARF GTPase-activating proteins domain profile. 11 129 IPR001164 GO:0005096
Stsc60502g00005 407 MobiDBLite consensus disorder prediction 124 233 - -
Stsc60502g00005 407 MobiDBLite consensus disorder prediction 166 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60502g00005 Stsc-Chr60502 36619 40745 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60502g00005 14 92 C2H2 Transcription Factor Family AT4G21160 47.500 8.15e-20 88.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60502g00005 K12493 K11855 gmx:100785169 642.884