Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60502g00004 ATGACTGATTACCGGTCACCGTCGACGATGAATCTTTGGACCGACGAAAACTCCTCCGTCATGGAAGCCTTCATGAGCTCCTCCGACCTCTCCTCCCTCTGGCTCCCTCCGCCACAATCCTCCGCTTCCACCTCCGCACCACCACTCCCACCGCAGCAGCAACCCCCTCCTCCCCCTCCCTTCAACCAAGAAACCCTCCAGCACCGTCTCCAAGCCCTAATCGAAGGCGCAAGAGAGAGCTGGACCTACGCAATCTTCTGGCAGTGCTCCTACGACTACTCCAACGGCCTCCCACTCTTAGGTTGGGGCGACGGTTACTACAAAGGCGAAGAAGACAAAGGCAAAGCCAAAGCCACCAAAGCGACGTCGTATGAGCAGCAGCAACACCGTAAGAAGGTTCTCAGAGAATTAAACTCTCTAATTTCAGGTCCTTCAGCTTCAGCCGACGAAGCCGTAGACGAAGAAGTAACCGACACGGAATGGTTCTTTCTTATATCGATGACTCAGCATTTCGTGAGCGGGACCGGACTCCCTGGCCAGGCTTTCTTTAATTCCAGCCCGGTTTGGCTTGCCGGGCCTGACCGGTTATTGGCATCCGGCTGTGACCGGGCCCGGCAAGGTCAGTCGTTTGGTATACAGAGTATAGTTTGTATACCTTCAGCAAACGGCGTCGTTGAGTTGGGTTCCACGGAGCTTATTTTTCAGAACGCGGATCTGATGAGCAAGGTGAAGGTGTTGTTCAATTTTAGTAACAGTAGTGGTGACGTGGCAGGATCTTGGCCGTTGAGTTCTGCAGATCAAGGAGAGAACGATCCTTCTTCGTTGTGGCTTAACGATCCTTCTTCGTCGGCCGGTGGGATCGAAATTCGAGATTCTGTTAATACGGTTACGGCCGCCGTTGGGAACAACAAAACGGTGCCGGTAGTTTCCAATCCTGGCGCCTCGAGCGTGGTAACTGAAGCGCAGAAGAATCCGCAGCAGAATCAGGGTTTTGTGCTGAGGGAATTGAATTTCTCAAGCTCGTTGAAGCCGGAATCTGGCGAGATTCTGAGCTTCGGAGAGAATAAGAAGGGTTCTTATGGCGGAAATAGTAATAACGGTGGTAACAATTTGTTCTCTGTTCAGTCTCAGTCTCAGTCGCAGTTTGTCTCCGATGAGAACAAGAAGCGGAGATCCCCTACTTCGCGGAGCAGCATTGAGGATGGAATACTGTCTTTTACTTCCGGCGTGATCTTGCCGGCTTCGAATGTGAAGTCCGGCGGCGGAGGCGGAGATTCGGATCATTCGGATTTGGAAGCTTCTGTGGTGAAGGAGGCGGTTGAGCCGGAGAAGAGGCCGCGAAAGAGAGGGAGGAAGCCGGCGAACGGAAGGGAGGAGCCGCTCAATCATGTGGAGGCAGAGAGGCAGAGGAGGGAGAAGCTCAATCAGAGGTTTTATGCTCTTAGAGCCGTGGTTCCCAATGTGTCGAAGATGGACAAGGCTTCTCTGTTAGGAGATGCTATTTCATACATCAACGAACTTAAATCGAAGCTACAAGGGCTGGAATCTGAGAAAGGCGAATTGAGCAAGCAATTGGAAGATTCCAAGAAGGAGCTGGAGCTGGCTAGTAAGAATTCAGGGGCTTCACAGGCCGCGCCGCCACCGCCTCCTCCTCCTCCTCCTGCGGATAAGGAACAAAGGACCCGTGCTGGTGGAGTAAATGGGAAATTGATTGATTTGGAGATTGAGGTGAAGATTATTGGTTGGGATGCTATGATTAGGATCCAATGTAGCAAGAAGAACCACCCTGCCGCGAGGCTGATGGCGGCGCTGCAGGACCTGGACTTGGAAGTTCACCATGCTAGTGTGTCAGTGGTTAATGATTTGATGATCCAGCAGGCTACGGTGAATATGGGAAGCCGGTTTTACACACAGGAGCAGCTCATGTTAGCACTATCATCCAAAGTCGGCGGCGGCGGAGATGCTAAGTAG 1971 0.5241 MTDYRSPSTMNLWTDENSSVMEAFMSSSDLSSLWLPPPQSSASTSAPPLPPQQQPPPPPPFNQETLQHRLQALIEGARESWTYAIFWQCSYDYSNGLPLLGWGDGYYKGEEDKGKAKATKATSYEQQQHRKKVLRELNSLISGPSASADEAVDEEVTDTEWFFLISMTQHFVSGTGLPGQAFFNSSPVWLAGPDRLLASGCDRARQGQSFGIQSIVCIPSANGVVELGSTELIFQNADLMSKVKVLFNFSNSSGDVAGSWPLSSADQGENDPSSLWLNDPSSSAGGIEIRDSVNTVTAAVGNNKTVPVVSNPGASSVVTEAQKNPQQNQGFVLRELNFSSSLKPESGEILSFGENKKGSYGGNSNNGGNNLFSVQSQSQSQFVSDENKKRRSPTSRSSIEDGILSFTSGVILPASNVKSGGGGGDSDHSDLEASVVKEAVEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYINELKSKLQGLESEKGELSKQLEDSKKELELASKNSGASQAAPPPPPPPPPADKEQRTRAGGVNGKLIDLEIEVKIIGWDAMIRIQCSKKNHPAARLMAALQDLDLEVHHASVSVVNDLMIQQATVNMGSRFYTQEQLMLALSSKVGGGGDAK 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60502g00004 656 MobiDBLite consensus disorder prediction 30 64 - -
Stsc60502g00004 656 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 458 507 IPR011598 GO:0046983
Stsc60502g00004 656 Pfam Helix-loop-helix DNA-binding domain 462 507 IPR011598 GO:0046983
Stsc60502g00004 656 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 66 247 IPR025610 -
Stsc60502g00004 656 SMART finulus 464 513 IPR011598 GO:0046983
Stsc60502g00004 656 MobiDBLite consensus disorder prediction 543 557 - -
Stsc60502g00004 656 CDD bHLH_AtAIB_like 455 531 - -
Stsc60502g00004 656 PANTHER MYC 22 648 IPR045084 GO:0003700|GO:0006355
Stsc60502g00004 656 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 461 526 IPR036638 GO:0046983
Stsc60502g00004 656 MobiDBLite consensus disorder prediction 260 281 - -
Stsc60502g00004 656 Coils Coil 504 538 - -
Stsc60502g00004 656 MobiDBLite consensus disorder prediction 533 561 - -
Stsc60502g00004 656 MobiDBLite consensus disorder prediction 360 400 - -
Stsc60502g00004 656 FunFam Transcription factor bHLH13 451 525 - -
Stsc60502g00004 656 MobiDBLite consensus disorder prediction 360 383 - -
Stsc60502g00004 656 Gene3D - 450 538 IPR036638 GO:0046983
Stsc60502g00004 656 MobiDBLite consensus disorder prediction 436 468 - -
Stsc60502g00004 656 MobiDBLite consensus disorder prediction 41 63 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60502g00004 Stsc-Chr60502 16439 18409 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60502g00004 1 650 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G32640 55.142 0.0 638
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc60502g00004 bHLH-MYC_N 3.2e-52 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60502g00004 K13422 - gmx:100790854 755.747