Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60501g00009 ATGGAGCTTGATTTGAATCAGGAGCCTTTGGAGTTGGACCCTTCTCACAATTCAGTAGCTGAAATTGATTCTCTGTTGGATGAACTTGAGTCTGCACATGGACATATACATGACCGGATTAGACACCTCGAAGCAGTGTATACCAGTGCTCGGCTGCGTTACAGGTGGCCGCCAGTTCACACTCCGATTCAGATAACAAACTTTACCGGTGAAGAAGCTGCACCAGCAAATGGCGAAGATGGAGGAGGAAGGGACAACCCGGTAGCCGAAGAATCTGAAGTTGGGAATGAAGCTAAAAGCAAGGGCACTCATTTGATTGCTAAGGCGTTGGGCATTGAACAGACAGATGCCATTGTGGCCGACCAAAGCTCTGCGAGTTTCTTTGATTGTAATATCTGCCTAGACATTGCGAGAGATCCTGTATTGACGTGCTGCGGCCACTTGTTTTGTTGGTCGTGCTTCTACAAGGTGTCGTATGCTTATTCGAATGCAAAGGAATGCCCTGTTTGTAAAGGAGAGGTAACTGAAAAGGGCATTATCCCAATCTATGGCAATGGAAGTAGTAGCACTAGCAATTCGAGGTTGGAATCGAATGAAACCGGTTTGAAAGTTCCTCCTCGACCGCCAGCACCGAGAGTGGAGAGCATACGGCAGCAGCTTATTAACCAAGGGGCTTCTTCTTCAACAATACGAAATCTTAGGCGGTTTCATAACCTAATTAGTGGGCGTGGAGAGCGAGTTCAGTCAGAAACCCCCAATATGCCTACAGGCAGCAGTAATAATGTTGTTCATGCTCAAACCCAGAGGGAGATTGATGACTATCAACATATTCATTCCCAACCGATTTCGAGGTTGTTAATGCAAGGAGCTACTTCGTTTTCATCCCTCTCATTGGCATTAAACTCTGCAATGAGTTCTGCAGAAAGATTAGTTGAGGACCTTGAATCATATTTGCATGGGCAACAGCCCGTAGGAAGCAGCACGCCGCCGTCAAACCCTCTGGATGCTAGTGTCTCTTCTTTAAGGGCTGCTGTTGAACACTACAATTATGCAGATAGTCTTTCTAGAGTTGCAGCTGCACTCCGTTTTGCAGCTGCAGCACCAGATTCTTCTTTAAGCAGAAACGATTTCACAGACGCTCTTAATGAAATGCGCATAGCCAATGAGCTGATGCAGATTAGATCGTCATCACCCTCATCACCCTCATCACCCTCGAATCGAAGAAGAACTAGTGCATCGAGAGGCGGTTCAAATGAGCTGAGAAGGAGGAGGTTAAGATGA 1281 0.4653 MELDLNQEPLELDPSHNSVAEIDSLLDELESAHGHIHDRIRHLEAVYTSARLRYRWPPVHTPIQITNFTGEEAAPANGEDGGGRDNPVAEESEVGNEAKSKGTHLIAKALGIEQTDAIVADQSSASFFDCNICLDIARDPVLTCCGHLFCWSCFYKVSYAYSNAKECPVCKGEVTEKGIIPIYGNGSSSTSNSRLESNETGLKVPPRPPAPRVESIRQQLINQGASSSTIRNLRRFHNLISGRGERVQSETPNMPTGSSNNVVHAQTQREIDDYQHIHSQPISRLLMQGATSFSSLSLALNSAMSSAERLVEDLESYLHGQQPVGSSTPPSNPLDASVSSLRAAVEHYNYADSLSRVAAALRFAAAAPDSSLSRNDFTDALNEMRIANELMQIRSSSPSSPSSPSNRRRTSASRGGSNELRRRRLR 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60501g00009 426 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 117 290 IPR045103 GO:0005783|GO:0006511|GO:0061630
Stsc60501g00009 426 MobiDBLite consensus disorder prediction 392 426 - -
Stsc60501g00009 426 MobiDBLite consensus disorder prediction 186 211 - -
Stsc60501g00009 426 ProSiteProfiles Zinc finger RING-type profile. 130 171 IPR001841 -
Stsc60501g00009 426 SUPERFAMILY RING/U-box 125 178 - -
Stsc60501g00009 426 SMART ring_2 130 170 IPR001841 -
Stsc60501g00009 426 MobiDBLite consensus disorder prediction 68 100 - -
Stsc60501g00009 426 MobiDBLite consensus disorder prediction 392 413 - -
Stsc60501g00009 426 Pfam Zinc finger, C3HC4 type (RING finger) 130 175 - -
Stsc60501g00009 426 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 107 208 IPR013083 -
Stsc60501g00009 426 MobiDBLite consensus disorder prediction 84 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60501g00009 Stsc-Chr60501 69053 70962 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60501g00009 64 238 C3H Transcription Factor Family AT3G58030 40.909 2.31e-32 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60501g00009 - - gmx:100794016 343.199