Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60500g00011 ATGACATCTCAAAATTTATCGAGGCAATTAAGAGGTCTTGTTGTAGATGACAACATTCTCAACAGAAAGATTCATGAGAGGATGTTGAATGGTTTGGGAGTGGAATGCATGGTAGTAGCAAATGGAAAAGAAGCTGTGGATGTTCATTGTTATGGTCAAAGCTTTGACCTAATTCTCATGGACAAGGATATGCCCATCATGAATGGCATTCAGACAATGATGGGTGAACTAACCACCGCCAAAGGGGATGTGGAACCGCCGGCAAGTGCCTCATATGCTGCAACAAAGGAACTTAGGTCAATGGGCATTAGCAGCATGATTGTTGCTGGCAACGGGAAAGGGGGACGTGGCAAGAAACGGGCCCCAACAACGTTAACGGATCCAGGCTGGCCCGTTTTGGGCGCTGCTAGTGAGAAACGACGTCGTTTCTCTAGCTGCTTCCTCTCTTTACCATCAAAACCCCCAACTTGCCTCTCATATTACAAGTTCTGCCCTAGCGTGTTAGTTAAGGTTCGAAGAAAGTCTTTGCCATTTCCATCGAAGCTGAGACGTTGTGGAAGAAGCAGACTGAAGGTGTGCTTGATCGTTGAACGTTTGGAGGAGGTGAATCGTCCGCCACAGCTGAGAAGTTCGGAGTTGCAACCACATCTCTTCCGTTGTGAGGTAAATTGCATGGTTTGGCAAATGAGGGATACTTTTTTTGTAGTTCCCATTTTCCACCACCGTGGAGAGCTGGTTCGGAACCCACTAGGTGAGCTCCAATATGCGAATGGGTTGGTGGAGAGGTTTGAAGAGATGGACATAGATCATCTCAATTTCGGGGACATGGTGAAGTTGTTTGAGTGGTTAGGTTATAAGAAATACATGCGTGTGTTCTGGGAGGATAAGAATGCCCCTAAGTTTGAAATAGGATTGAATAGGTTGAGAGGTGATGTTGATATCCGTGAGCTGATTGACTATCTTAGGATGAACAGGGTGTCAGAGTTCCATTTGTATTGGGATCATGTCATTGAAGAACCAATATTTGCTGATGATGCTGATGGTGTCAATGATGGCAATCATGGTGGTGATGTGCAAGGTGGTTTTGATGCTGCTCGTCTAAATGATGTGAATCAGGGTGGGTTAAATGCAGGCAATGATGTAGGTGATGGGTTTGCTGGGATGGGTGGAATTGGGGAAGCAAATTTAGGTGGGCATAATGGTGTGGGAAATGCAGCACCAATTATCTTGGATGAGACAAGCTCCTCCTCAAATGACGGTTATGAAAGTGCGGATGATGAAGCATATAAACCCCCTCCTGATTGGAAGGATGATACGGGCAGTGACAGTGACAATGAGGCATTGAAGAAAAGAAAGGTTGCTGATTCTGGGAAGGGGGTTTCACCAAGGAAGATCATACATCAAAGAAAGACTAAGAAGGTGGCAAATAAGGGCAAGAAAAAAGAGTTGGGTCAGCATGGGAATGGTAAGAAAATGCAATGTGGTATTCGAAGATCAAATGTTGGGCCTAATGTACAGAATGGAGCAGGCCCAAGCAATGTGGGAGGATCTTCCAGACCCAATGCACACCCCAGTAGTTATTCAGAATTGGGTGAGGAGGGTGGCCCAATTGATGGGGAATAG 1623 0.4566 MTSQNLSRQLRGLVVDDNILNRKIHERMLNGLGVECMVVANGKEAVDVHCYGQSFDLILMDKDMPIMNGIQTMMGELTTAKGDVEPPASASYAATKELRSMGISSMIVAGNGKGGRGKKRAPTTLTDPGWPVLGAASEKRRRFSSCFLSLPSKPPTCLSYYKFCPSVLVKVRRKSLPFPSKLRRCGRSRLKVCLIVERLEEVNRPPQLRSSELQPHLFRCEVNCMVWQMRDTFFVVPIFHHRGELVRNPLGELQYANGLVERFEEMDIDHLNFGDMVKLFEWLGYKKYMRVFWEDKNAPKFEIGLNRLRGDVDIRELIDYLRMNRVSEFHLYWDHVIEEPIFADDADGVNDGNHGGDVQGGFDAARLNDVNQGGLNAGNDVGDGFAGMGGIGEANLGGHNGVGNAAPIILDETSSSSNDGYESADDEAYKPPPDWKDDTGSDSDNEALKKRKVADSGKGVSPRKIIHQRKTKKVANKGKKKELGQHGNGKKMQCGIRRSNVGPNVQNGAGPSNVGGSSRPNAHPSSYSELGEEGGPIDGE 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60500g00011 540 MobiDBLite consensus disorder prediction 111 131 - -
Stsc60500g00011 540 MobiDBLite consensus disorder prediction 423 458 - -
Stsc60500g00011 540 MobiDBLite consensus disorder prediction 463 477 - -
Stsc60500g00011 540 Pfam Response regulator receiver domain 13 73 IPR001789 GO:0000160
Stsc60500g00011 540 Gene3D - 1 81 - -
Stsc60500g00011 540 PANTHER TWO-COMPONENT RESPONSE REGULATOR 11 109 - -
Stsc60500g00011 540 ProSiteProfiles Response regulatory domain profile. 11 142 IPR001789 GO:0000160
Stsc60500g00011 540 MobiDBLite consensus disorder prediction 499 525 - -
Stsc60500g00011 540 CDD REC_hyHK_CKI1_RcsC-like 13 72 - -
Stsc60500g00011 540 SUPERFAMILY CheY-like 12 73 IPR011006 -
Stsc60500g00011 540 MobiDBLite consensus disorder prediction 411 540 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60500g00011 Stsc-Chr60500 52260 56535 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60500g00011 13 109 Response Regulator Gene Family AT3G04280 39.796 2.29e-13 65.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Stsc60500g00011 Response_reg 2.1e-09 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60500g00011 - - ahf:112778107 145.591