Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60500g00008 ATGAACAATCACCGTGTGCCAGACTTGGAAATCGAAATGGAGGAGCAAGAGTACCATACCCGCCAAAAGAAACCATCCTCAATCTCCATGGCAGCAGACGAAGACGTAATGGAGCTGTTATGGCAAAACGGTCAGGTAGTTATGCACACTCAGAACCACCGACCTACTCCTACAACAAATCAAAATCACCACCTCTTCATGCAAGAAGATGAGATGATTTCTTTGCTCAACCCTCCCTTCGATCACACCTTATCTTCTGATTTCCTCTATGACAACCACACCACCACCACCTCTGCCGACATGCATACTACGCCTCCGCATACCTCTTCTATCACGGATCTCCGCCCTTTTCCGGCTCCACGGCCTCCGATTCCCCCGCCCAGGAGGCAAGATAAGGAGCCGCCAGCCACCAACACACCGAACTTCGCGTGTTTCGCCAAGCACAATAACGCCAGAGGAGATGCAGTGGCGACGAAGAAACCGATCGCGCCGAGAGAACAAACCACGGTGGTGGAGTCGTGCGATACGCCTTTTGCGGAGACTTCGAGAGTTTCGGAGAACGCGAGATGCTCGGAAGGGGACGGCCGCCGCGGAAGCATGAGCGGCGCTGGTGAGGCGGCGCCTTCGACGACGGCGTTAGATTTGACGATGACGTCGTCTCCGGGAGGTTCGTGTAGCAGCGGGGAACTGTTTCAAAGAGCAGCGGCAGAGGATCGGAAGCGGAAGGGGAGGGAAGCGGAGGATTGGGAGTGTCAGAGCGAGGATGTGGATTTTGAATCGGCGGAGGCGAAAAAACAAGGTCGCGGTGGATCCACATCCACAAGGAGGTCCCGTGCGGCAGAGGTTCATAATCTCTCCGAGAGGAGGCGGCGTGATCGGATTAATGAAAAGATGAAAGCTCTGCAAGATCTTATACCTCGTTCTAATAAGTCTGACAAAGCTTCAATGCTGGATGAAGCAATTGAATACCTCAAGTCACTGCAGTTACAAGTGCAGATGATGTCAATGGGATGTGGCATGGTACCAACTATGATGTTTCCTGGTATCCAGCATCAGTATATGCCGGCAATGGGAATGGGGATTGGAATGGGTATGGGCATGGATATGGGAATGGGAATGAACATGAATATGAACATGAACATGAACAGACCCGTAATGCCATTTCCCAATATGTTAGCAGCTTCACCTGCTGCTGCTACTCATTTGGGACCAAGGTTCCCTATGCCTCCTTTCCCTGTGCCTCATCACGTGCCTTCTGCACCTAACACTAGAATGCAGCAGCTGCAAGCCGCAAATAATAATCAATCGGATAATAATAGTAACATGATGCCCAATAATTCAGTTGTTACTCCTCTTGCTGACCCAAATCATCACTCACGTATCCCACCAATCTTCACTGATCCTTATCAACAATACCTTGCTCATGGTCCCCACCAGATGCAGTTTCAATTAATGCAGAATCAGGCAGTGAACCAGCCAAATGTCTGCAAACCAAGCACAAGTGGCGGCCCCGAAACCCATCATCAGCCAGAAAAAGGAAGGGGCTCTCGTCCATTATTAACAGTGACTTGCATTGTTTGCATTGCAGGCTAG 1593 0.5066 MNNHRVPDLEIEMEEQEYHTRQKKPSSISMAADEDVMELLWQNGQVVMHTQNHRPTPTTNQNHHLFMQEDEMISLLNPPFDHTLSSDFLYDNHTTTTSADMHTTPPHTSSITDLRPFPAPRPPIPPPRRQDKEPPATNTPNFACFAKHNNARGDAVATKKPIAPREQTTVVESCDTPFAETSRVSENARCSEGDGRRGSMSGAGEAAPSTTALDLTMTSSPGGSCSSGELFQRAAAEDRKRKGREAEDWECQSEDVDFESAEAKKQGRGGSTSTRRSRAAEVHNLSERRRRDRINEKMKALQDLIPRSNKSDKASMLDEAIEYLKSLQLQVQMMSMGCGMVPTMMFPGIQHQYMPAMGMGIGMGMGMDMGMGMNMNMNMNMNRPVMPFPNMLAASPAAATHLGPRFPMPPFPVPHHVPSAPNTRMQQLQAANNNQSDNNSNMMPNNSVVTPLADPNHHSRIPPIFTDPYQQYLAHGPHQMQFQLMQNQAVNQPNVCKPSTSGGPETHHQPEKGRGSRPLLTVTCIVCIAG 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60500g00008 530 Pfam Helix-loop-helix DNA-binding domain 282 328 IPR011598 GO:0046983
Stsc60500g00008 530 MobiDBLite consensus disorder prediction 492 506 - -
Stsc60500g00008 530 SMART finulus 284 333 IPR011598 GO:0046983
Stsc60500g00008 530 PANTHER TRANSCRIPTION FACTOR PIF3 155 451 IPR044273 GO:0003700|GO:0006355
Stsc60500g00008 530 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 278 327 IPR011598 GO:0046983
Stsc60500g00008 530 MobiDBLite consensus disorder prediction 96 293 - -
Stsc60500g00008 530 MobiDBLite consensus disorder prediction 233 249 - -
Stsc60500g00008 530 Gene3D - 273 336 IPR036638 GO:0046983
Stsc60500g00008 530 MobiDBLite consensus disorder prediction 96 111 - -
Stsc60500g00008 530 FunFam Basic helix-loop-helix transcription factor 273 336 - -
Stsc60500g00008 530 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 276 344 IPR036638 GO:0046983
Stsc60500g00008 530 MobiDBLite consensus disorder prediction 492 516 - -
Stsc60500g00008 530 MobiDBLite consensus disorder prediction 169 186 - -
Stsc60500g00008 530 CDD bHLH_AtPIF_like 278 341 IPR047265 -
Stsc60500g00008 530 MobiDBLite consensus disorder prediction 116 133 - -
Stsc60500g00008 530 MobiDBLite consensus disorder prediction 211 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60500g00008 Stsc-Chr60500 33634 36629 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60500g00008 4 333 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 40.331 6.76e-55 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc60500g00008 HLH 3.3e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60500g00008 - - gmx:100797225 424.861