Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60499g00017 ATGCTTCCTCTGCTTCTCTGCCTGCTCTGCATTCTCCTCACCCCCGTTTCATCCCTCAACCAAGAAGGCCTCTACCTCCAACAATTCAAGCGCACCCTCGACGACCCCGACAACCGCCTCTCCGACTGGAACCCCCGCCACGCCACCCCTTGCAACTGGTACGGCGTCCTTTGCGACCCTCTCACCAACACCACCGTCACCTCCCTCTCCCTCCCCGACACCAACATCGCCGGCCCATTCCCCGCCCACATCCTATGCCGCCTCCCCAACCTCTCCTCCATCAACCTCTTCAACAACTCCATCAACGCCACCCTCCCCCTCAACATCTCCCTCTGCTCCAACCTCCAACACCTCGACCTCTCTCAGAACCTCCTCACCGGCACCCTCCCCCACACCCTCCCTGACCTCCCCAACCTCCGCTACCTCGACCTCACCGGCAACAACTTCTCCGGCCCCATCCCTGACTCCTTCGGATCCTTCCAGAAACTGGAGGTCATCTCCCTCGTCTACAACCTTCTAGAAGGCACCATCCCTCCCTCATTGGGGAACCTAACCACCCTCAAAATGCTCAACCTCTCTTACAACCCCTTCTACCCGGGTCGGATCCCGGACTCGCTCGGCAACCTCACCAACCTGGAGGTCCTCTGGCTCACACAGTGCAACCTCGTTGGCACCATTCCAGACTCGCTTGGCAACTTGAACAACCTTAGGGACTTGGACCTTGCCCTCAACGATTTGTACGGTTCCATCCCCAATTCCCTCACTCGTTTGACTCGTTTGACTCAGATTGAGTTATACAACAACTCCCTCTCCGGGGAGCTGCCACGTGGCTGGACAAATCTCACCTCGCTACGCCTTCTCGACGCCTCCATGAACCACTTGACGGGGACCATACCGGAGGAGCTCTGCTCCTTGCCCTTGGAGAGTCTCAACCTCTACGAGAACCGCTTGGAGGGCCACTTGCCTGCGAGCATTGCCAATTCGCCTAACCTCTACGAGCTCAGGCTCTTCGGGAACCGTCTCACCGGAAGGTTGCCGGAGAATCTGGGGCAGCATTCTCCTCTCAGGTGGCTCGACGTCTCCAGTAACCAGTTCTTCGGACTCATTCCGGCCACACTCTGCGATCACGGGGAACTGGAGGAGCTTCTTGTGATATACAATTTGTTTTCCGGCGAGATTCCGGCGAGTCTGGGAACGTGCCAGAGCCTGACGCGGGTGAGGCTGGGGAACAACCGGTTCTCCGGCGAGGTGCCGGCGGGGATGTGGGGTCTTCCGCACGTTTACCTTCTGGAATTTGCGGAGAACTCGTTCTCCGGCCCCATCGCGAGGACCATTGCCGGTGCCGGGAACCTTTCGCTGCTGCTTCTCTCGAAGAATAAGTTCGAGGGAGTGATCCCTGACGAGGTTGGGTGGTTGGAGAATCTCGTGGAATTCTCTGGTAACGATAACATGTTCAGTGGTTCGATCCCTGAGACCGTTGTGAATCTCGGGCAGCTTGGGACCCTTGATCTTCACAACAACAAACTCTCCGGTGAGCTTCCAAAAGGGCTTCATTCTTTGAAGAAGCTCAGTGTTTTGAGTTTGGCCAACAATGGGATTGGTGGGAAGATTCCAGATGAGATTGGTAGCTTGTCAGTGTTGAATTCTCTTGACCTCTCCAAGAACCAATTCTCAGGGATGGTCCCTCACGGATTGCAGAATTTGAAGCTGAATATTCTGAATTTGTCTTACAATCATCTCTCTGGTGAGCTCCCTCCTCTGTTGGCTAAGGATGTGTATGTGGATAGCTTTCTGGGGAACCCCGGTTTGTGCGGGGATTTGAAGGGTCTCTGCGATGGAAGAAGCCAATCCAAGAGTTCGGGTTATGTTTGGCTTCTCAGGAGTATATTCATTGTTGCCACCTTGGTGTTCTTTGTGGGTGTGGTGTGGTTCTACTTCAAGTATAAGACTTTCAAGGATGCTAGAAGGTCTATTGATAAGTCAAGGTGGACGTTGATGTCGTTTCATAAACTGGGTTTTGGTGAAGATGAGATCTTGAATTGCCTTGATGAGGATAATGTGATTGGAAGTGGGTCATCCGGGAGAGTCTACAAGGTGGTGCTTAGCAGTGGGGAGGCTGTTGCGGTGAAGAAGATATGGGGAGGGAAAGGGAAGGGTGTAGAGAGTGGAGATTTGGAAAAAGGAGGTGGTGGTGGAAGGGTGCAAGATGAAGCTTTTGATGCGGAGGTTGAGACTTTGGGCAAGATCAGGCACAAGAACATTGTTAAGCTGTGGTGTTGCTGCACAACCAGGGATTGCAAGCTACTGGTTTACGAGTACATGCCCAATGGTAGTCTTGGAGATTTGTTGCATAGCAGCAAAGGAGGGTTGTTGGATTGGCCAACCAGGTATAAGATAGCTGTCGATGCTGCGGAAGGCCTCTCTTATCTGCATCATGATTGTGTTCCACCAATTGTTCATAGAGATGTGAAATCCAGCAATATCTTGTTGGATGGAGACTATGGTGCGAGGGTGGCGGATTTTGGAGTGGCCAAGGTCGTTGAAACTGGTGGGAAAGGAGGAACCAAATCCATGTCTGTCATAGCTGGGTCTTGTGGGTACATCGCACCAGAATATGCATACACACTCAGAGTGAACGAGAAAAGTGACATATACAGTTTTGGTGTTGTGATACTTGAATTGGTTACTGGGAGGCGTCCGGTGGATCCTGAATTCGGAGAGAAGGACTTGGTAAAGTGGGTGTGCACCACCCTGGATCAGAAAGGGATGGACCTTTTAATTGACTCGAGGCTCGATTCTTGTTTCAAGGACGAAATCTCCAAGGTCTTCAACATTGGCCTCATGTGCACCAGCCCTCTTCCAATCAACCGGCCCTCCATGAGAAGGGTGGTGAAGATGTTGCAAGAGGTGGCAACAGAGAAGCAAGTGAAGCCTGCCAAGAAAGACGGCAAGTTAACCCCTTATTACTACGATGATGCCTCGGATCATGGAAGTATTGCTTGA 3003 0.5265 MLPLLLCLLCILLTPVSSLNQEGLYLQQFKRTLDDPDNRLSDWNPRHATPCNWYGVLCDPLTNTTVTSLSLPDTNIAGPFPAHILCRLPNLSSINLFNNSINATLPLNISLCSNLQHLDLSQNLLTGTLPHTLPDLPNLRYLDLTGNNFSGPIPDSFGSFQKLEVISLVYNLLEGTIPPSLGNLTTLKMLNLSYNPFYPGRIPDSLGNLTNLEVLWLTQCNLVGTIPDSLGNLNNLRDLDLALNDLYGSIPNSLTRLTRLTQIELYNNSLSGELPRGWTNLTSLRLLDASMNHLTGTIPEELCSLPLESLNLYENRLEGHLPASIANSPNLYELRLFGNRLTGRLPENLGQHSPLRWLDVSSNQFFGLIPATLCDHGELEELLVIYNLFSGEIPASLGTCQSLTRVRLGNNRFSGEVPAGMWGLPHVYLLEFAENSFSGPIARTIAGAGNLSLLLLSKNKFEGVIPDEVGWLENLVEFSGNDNMFSGSIPETVVNLGQLGTLDLHNNKLSGELPKGLHSLKKLSVLSLANNGIGGKIPDEIGSLSVLNSLDLSKNQFSGMVPHGLQNLKLNILNLSYNHLSGELPPLLAKDVYVDSFLGNPGLCGDLKGLCDGRSQSKSSGYVWLLRSIFIVATLVFFVGVVWFYFKYKTFKDARRSIDKSRWTLMSFHKLGFGEDEILNCLDEDNVIGSGSSGRVYKVVLSSGEAVAVKKIWGGKGKGVESGDLEKGGGGGRVQDEAFDAEVETLGKIRHKNIVKLWCCCTTRDCKLLVYEYMPNGSLGDLLHSSKGGLLDWPTRYKIAVDAAEGLSYLHHDCVPPIVHRDVKSSNILLDGDYGARVADFGVAKVVETGGKGGTKSMSVIAGSCGYIAPEYAYTLRVNEKSDIYSFGVVILELVTGRRPVDPEFGEKDLVKWVCTTLDQKGMDLLIDSRLDSCFKDEISKVFNIGLMCTSPLPINRPSMRRVVKMLQEVATEKQVKPAKKDGKLTPYYYDDASDHGSIA 1000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60499g00017 1000 Pfam Leucine Rich Repeat 211 233 IPR001611 GO:0005515
Stsc60499g00017 1000 SMART serkin_6 682 989 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60499g00017 1000 SUPERFAMILY L domain-like 379 589 - -
Stsc60499g00017 1000 Pfam Leucine rich repeat N-terminal domain 20 59 IPR013210 -
Stsc60499g00017 1000 FunFam Receptor-like protein kinase HSL1 666 773 - -
Stsc60499g00017 1000 ProSiteProfiles Protein kinase domain profile. 682 971 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60499g00017 1000 Gene3D Transferase(Phosphotransferase) domain 1 774 993 - -
Stsc60499g00017 1000 SMART LRR_typ_2 184 209 IPR003591 -
Stsc60499g00017 1000 SMART LRR_typ_2 281 305 IPR003591 -
Stsc60499g00017 1000 SMART LRR_typ_2 88 112 IPR003591 -
Stsc60499g00017 1000 SMART LRR_typ_2 136 159 IPR003591 -
Stsc60499g00017 1000 SMART LRR_typ_2 544 567 IPR003591 -
Stsc60499g00017 1000 SMART LRR_typ_2 329 352 IPR003591 -
Stsc60499g00017 1000 SMART LRR_typ_2 233 257 IPR003591 -
Stsc60499g00017 1000 SMART LRR_typ_2 496 520 IPR003591 -
Stsc60499g00017 1000 Gene3D Phosphorylase Kinase; domain 1 667 773 - -
Stsc60499g00017 1000 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 774 984 - -
Stsc60499g00017 1000 ProSitePatterns Serine/Threonine protein kinases active-site signature. 818 830 IPR008271 GO:0004672|GO:0006468
Stsc60499g00017 1000 SUPERFAMILY Protein kinase-like (PK-like) 678 967 IPR011009 -
Stsc60499g00017 1000 FunFam Receptor-like protein kinase HSL1 306 613 - -
Stsc60499g00017 1000 Gene3D Ribonuclease Inhibitor 328 613 IPR032675 -
Stsc60499g00017 1000 SUPERFAMILY RNI-like 68 418 - -
Stsc60499g00017 1000 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 19 184 - -
Stsc60499g00017 1000 Pfam Protein kinase domain 684 912 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60499g00017 1000 Gene3D Ribonuclease Inhibitor 203 257 IPR032675 -
Stsc60499g00017 1000 Gene3D Ribonuclease Inhibitor 24 133 IPR032675 -
Stsc60499g00017 1000 Gene3D Ribonuclease Inhibitor 258 327 IPR032675 -
Stsc60499g00017 1000 Pfam Leucine rich repeat 89 149 IPR001611 GO:0005515
Stsc60499g00017 1000 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 229 969 - -
Stsc60499g00017 1000 ProSitePatterns Protein kinases ATP-binding region signature. 688 711 IPR017441 GO:0005524
Stsc60499g00017 1000 Gene3D Ribonuclease Inhibitor 134 202 IPR032675 -
Stsc60499g00017 1000 FunFam Leucine-rich receptor-like protein kinase family protein 202 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60499g00017 Stsc-Chr60499 117920 121954 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60499g00017 16 1000 Receptor kinase-like Gene Family AT1G28440 70.071 0.0 1385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc60499g00017 Pkinase 7.3e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60499g00017 - - gmx:100819887 1607.04