Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60499g00009 ATGGCGGGTTTGATTGATCTCAACACCACGGAGGACGATGAAACGCCGTCTTATGGATCCTACGCTGCTTCTTCGTCTTCTTCTTCCTCGCACTCGGGAACAAGCACTGCTTCAGCTCGAGCTCCAGCTCCAGCTCCAGTTGCTCCCGCTTCTTCTTCTTCTTCTTCTTCGGTGTGTTTGGAGCTGTGGCACGCGTGTGCAGGTCCAATGATCTCGTTACCGAAAAAGGGAACCCTTGTTGTGTACTTCCCACAGGGACACTCTGAGCAGCAGCTTCACGATTTTCCTCTCACTAACAACAATAACACCATCCCATCCCATGTCTTCTGTCGCGTTCTTGATGTTAAGCTCCATGCAGAGGAAGGGAGTGATGAAGTGTATTGCCAGGTTTTTCTTGTTCCTGAAAATGAGGAATTACAACGAAAATTTCGGGAAGGCGAAATTGAGGCTGAAGAGGAGGACACTGATGTTGTGATGAAGGCAACAACACCTCACATGTTTTGCAAGACTCTGACAGCTTCTGATACTAGCACTCATGGTGGATTCTCTGTTCCCCGTCGAGCGGCTGAAGATTGCTTTCCTCCCCTGGATTATAGTCAACAGAGGCCTTCGCAAGAGCTTGTAGCAAAGGATCTGCATGGCCGGGAATGGAAGTTTCGACATATTTACAGGGGGCAGCCGCGAAGGCATTTGCTTACCACCGGATGGAGTGCATTTGTGAACAAGAAGCGACTTGTATCTGGAGATGCTGTACTGTTTCTTAGGGGTGAGGATGGTGAACTGAGACTGGGAATTCGTAGGGCAGCTCAACTGAAAAGTGATGGTAAATTTTCTGTTCTCCCTCCCCAGCAATTGAATCATAGCACTCTCGTGGACGTGATTAATGCTTTGTCTTCAAGATGTGCCTTCAGCATTTGCTATAACCCGAGGGCCAGTTCATCTGACTTCATCATCCCTGTCCACAAATTCTTCAAGAGCCTTGATTATTCTTATTCAGTTGGAATGAGGTTCAGGATGCGTTTTGAAACCGAAGATGCTGCAGAACGAAGAATCACAGGATTGATTATTGGGATTAATGATGTTGATCCTGTTAGATGGCCTGGGTCAAAATGGAGATGCCTGCTGGTAAGGTGGGATGACTTAGAAACCACACGGCATAATAGGGTTTCTCCATGGGAGATTGAGCCATCTGGTTCTTCCACTGCCAGTAGCCTGATGACAGCTGGTTTGAAGAGGAGCAAGATTGGATTGCCTTCAGCACAGCTAGAATTTCCAGTTCCCAATGGGATCAGTACATCAGACTTTGGGGAATCGCTAAGGTTCCAGAAGGTCTTGCAAGGTCAAGAAATTTTGGGTGTTAATAATCATGTCAATGGTTTTAATGCTCAGTGTCACCAATTATCGGAACTAAGAAGGTGCTATCCTGGTACAACTTATCCTGGATTTACCACAGCAGGACATGGTACAATCCCACAGGTGAGTTCCGATGGTTCCTGCAACGGCACAGGCTTTGGTGAATCTTTCCGATTCCAAAAGGTCTTGCAAGGTCAAGAAATACTTCCAAGCCAACCATATGGAAGAGCTTTGTCTCTTGACGAGGCTTGTGGAAATGGTCGCCTCGGAGCTTTTGATGGTTACCAGATGCTAAGATCCAGAAATGGGTGGTCTGCGCATATGAATAACAATTCTTCTCATTTGCATGCACCGTTTCCATCTGGTCAAGTGTCATCTCCATCATCCGTGTTGATGTTCCAGCAAGCATTTAATCCGGTTTCGAACTCTGATTATAAAAACAATGCTAATCAGATGAAGGGAGGTAAAGCAATTCAACGAGGTTCATATGCTTCCACAGTTAATGGTGCAACAACTGCTTCCTTCCCATCTTATGAGACAACTTTCCGTGGGAAAGCTGAGGAAGGAAAAAATTCTTTCACTTTCTTAAATCTGCATGATCAGTTGGGCAGTTCACGTTTGCCTGATTCGAGATCAGAGCCGGGAGGAAGTCAAGAGTTGGTTTCTTCATGTAAAAGCAACTGCAGAGTCTTTGGTTTTTCGCTAACCGAGGGTGCTCCCATTGCAAATGAAGAGACTGATCCCTCTACAGTCACTTGTCAATTAAGTTCTGGGCCTTCTTTTACAAGACATTGCCAATGA 2154 0.4605 MAGLIDLNTTEDDETPSYGSYAASSSSSSSHSGTSTASARAPAPAPVAPASSSSSSSVCLELWHACAGPMISLPKKGTLVVYFPQGHSEQQLHDFPLTNNNNTIPSHVFCRVLDVKLHAEEGSDEVYCQVFLVPENEELQRKFREGEIEAEEEDTDVVMKATTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGREWKFRHIYRGQPRRHLLTTGWSAFVNKKRLVSGDAVLFLRGEDGELRLGIRRAAQLKSDGKFSVLPPQQLNHSTLVDVINALSSRCAFSICYNPRASSSDFIIPVHKFFKSLDYSYSVGMRFRMRFETEDAAERRITGLIIGINDVDPVRWPGSKWRCLLVRWDDLETTRHNRVSPWEIEPSGSSTASSLMTAGLKRSKIGLPSAQLEFPVPNGISTSDFGESLRFQKVLQGQEILGVNNHVNGFNAQCHQLSELRRCYPGTTYPGFTTAGHGTIPQVSSDGSCNGTGFGESFRFQKVLQGQEILPSQPYGRALSLDEACGNGRLGAFDGYQMLRSRNGWSAHMNNNSSHLHAPFPSGQVSSPSSVLMFQQAFNPVSNSDYKNNANQMKGGKAIQRGSYASTVNGATTASFPSYETTFRGKAEEGKNSFTFLNLHDQLGSSRLPDSRSEPGGSQELVSSCKSNCRVFGFSLTEGAPIANEETDPSTVTCQLSSGPSFTRHCQ 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60499g00009 717 FunFam Auxin response factor 330 401 - -
Stsc60499g00009 717 MobiDBLite consensus disorder prediction 10 39 - -
Stsc60499g00009 717 Gene3D - 330 404 - -
Stsc60499g00009 717 SUPERFAMILY DNA-binding pseudobarrel domain 160 280 IPR015300 -
Stsc60499g00009 717 Coils Coil 136 156 - -
Stsc60499g00009 717 MobiDBLite consensus disorder prediction 692 717 - -
Stsc60499g00009 717 Gene3D - 165 269 IPR015300 -
Stsc60499g00009 717 SMART B3_2 167 269 IPR003340 GO:0003677
Stsc60499g00009 717 CDD B3_DNA 165 267 IPR003340 GO:0003677
Stsc60499g00009 717 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 56 691 IPR044835 GO:0003677|GO:0006355|GO:0009725
Stsc60499g00009 717 FunFam Auxin response factor 165 269 - -
Stsc60499g00009 717 MobiDBLite consensus disorder prediction 694 717 - -
Stsc60499g00009 717 MobiDBLite consensus disorder prediction 1 50 - -
Stsc60499g00009 717 Pfam B3 DNA binding domain 167 268 IPR003340 GO:0003677
Stsc60499g00009 717 ProSiteProfiles B3 DNA-binding domain profile. 167 269 IPR003340 GO:0003677
Stsc60499g00009 717 Pfam Auxin response factor 294 374 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60499g00009 Stsc-Chr60499 69594 74785 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60499g00009 166 522 B3 DNA Binding Superfamily AT2G33860 59.780 2.00e-146 433
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Stsc60499g00009 B3 3.1e-23 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60499g00009 K14486 - gmx:100808119 1026.93