Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60499g00005 ATGGATTTGAATGGCAGTAAAAATAATGAAGAGAGTGAATTGTACCACGCACAAATCCACTTGTACAAGCATGTCTACAACTGGGTTAGCTCCATGGCTCTCAAGGCCATTATGGAGCTAGGCGTGGCTGACGTCATCCACAGCCATGGTAAGCCCCTCACCCTCTCTCAACTGGCCGCTGAGCTCAACCTGCACCCTTCCAAAGTGGGAGCCCTCCACCGCTTCCTCCGCCTCCTAACACACAACGGTTTCTTCGCCAAGACCAAGATTCAAGAACAAGAACAACAAGAGGAAGAAGCTTACGCTCTCACCCCTCCTTCCAAGCTTCTCATCAGGAGCAAGCCGACGAATCTTTCGTCCATAGTGAAGGGAGCACTCCATTGGAGCTCCCTTGACATGTGGCACTCTTCCGACAAGTGGTTCACCGAGGACAAGGAACAAACCATGTATGAGACCTCTTCTGGAGGACAGAGCTTCTGGGATTTCCTCAACAACGAACCTGATTGCATCAAAATGTTCCAGGATGCCATGGCTTCTGATTCTTACATGTTCAAGCTTGCACTCAAGGAGTGCAGGCACGTGTTTGAGAATCTTGGCTCCATTGTTGATGTTGGTGGTGGTACCGGTGGTGTCTCCAGACTCATCCATCAAGAGTTTCCGCAGTTGAAGTGCACCGTTTTTGACCAGCCAGAGGTTGTTGCTAACCTCAAAGGTGATGATGACAATTTGAACTTTGTTGGCGGTGACATGTTCAAATCCATTCCTTCTGCTGATGCAGTCTTACTCAAGTGGGTTCTACATGACTGGAATGATGAACTGGCCTTGAAGATATTGAAGAACAGCAAGGAAGCTATCTCCGGAAGAGGGAAAGAAGGGAAGGTGATAATCATAGACATATCGATTGATGAAAGGAGCGATGATAAGGAATTGACTGAGCTGAAACTGGACTATGATTTAGTGATGCTGACAATGTTCAATGGAAAGGAAAGAGAGAGGAAGGAATGGGACAAGCTCATCAATGAAGCAGGATTCAGCAGATACACCATCACCCCAATTTGTGGCTTCAAGTCCCTTATTGAAGCTTACCCTTAA 1092 0.4725 MDLNGSKNNEESELYHAQIHLYKHVYNWVSSMALKAIMELGVADVIHSHGKPLTLSQLAAELNLHPSKVGALHRFLRLLTHNGFFAKTKIQEQEQQEEEAYALTPPSKLLIRSKPTNLSSIVKGALHWSSLDMWHSSDKWFTEDKEQTMYETSSGGQSFWDFLNNEPDCIKMFQDAMASDSYMFKLALKECRHVFENLGSIVDVGGGTGGVSRLIHQEFPQLKCTVFDQPEVVANLKGDDDNLNFVGGDMFKSIPSADAVLLKWVLHDWNDELALKILKNSKEAISGRGKEGKVIIIDISIDERSDDKELTELKLDYDLVMLTMFNGKERERKEWDKLINEAGFSRYTITPICGFKSLIEAYP 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60499g00005 363 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 22 363 IPR016461 GO:0008168
Stsc60499g00005 363 Pfam O-methyltransferase domain 134 345 IPR001077 GO:0008171
Stsc60499g00005 363 Gene3D - 4 110 IPR036388 -
Stsc60499g00005 363 PANTHER O-METHYLTRANSFERASE 16 346 IPR016461 GO:0008168
Stsc60499g00005 363 Pfam Dimerisation domain 32 80 IPR012967 GO:0046983
Stsc60499g00005 363 SUPERFAMILY "Winged helix" DNA-binding domain 11 114 IPR036390 -
Stsc60499g00005 363 Gene3D Vaccinia Virus protein VP39 112 363 IPR029063 -
Stsc60499g00005 363 FunFam Coniferyl alcohol 9-O-methyltransferase 4 110 - -
Stsc60499g00005 363 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 129 362 IPR029063 -
Stsc60499g00005 363 PIRSF O-mtase 1 363 IPR016461 GO:0008168
Stsc60499g00005 363 FunFam O-methyltransferase ZRP4 113 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60499g00005 Stsc-Chr60499 40085 42089 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60499g00005 29 344 Monolignol Biosynthesis Gene Families AT5G54160 30.625 4.16e-40 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60499g00005 K22588 - gmx:100807589 532.717