Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60498g00012 ATGACTGAGTGCAATGAAAATGAAAACAATAATAATCATGGAAACATCATGGTGGAGGGAAGAAAAGACAGCTTAATTAGAACTTGTCCAACATGTGGTCATCACATCAAATGCCAAGATCAGGGTGGTGGAATTCATGATTTACCTGGACTACCGGCTGGAGTGAAATTTGATCCAACAGATCAAGAGATTCTTGAACATTTGGAAGCAAAAGTGCGATCTGATATTCATAAGCTTCACCCTTTAATTGATGAGTTCATCCCAACTCTTGAAGGAGAGAATGGAATCTGCTATACTCATCCAGAGAACTTGCCAGGAGTAAGTAAGGATGGGTTGATCCGCCATTTCTTCCACCGGCCATCAAAAGCGTACACAACCGGAACAAGAAAGAGGAGGAAGGTGAACTCGGATGAGGACGGTAACGAAACCCGGTGGCACAAAACAGGCAAGACCAGACCGGTCTACATAAATGGGAAGCTGAAAGGATACAAGAAAATCCTTGTTCTCTACACAAACTATGGGAAGCAAAGGAAGGCAGAGAAAACCAATTGGGTGATGCATCAATACCACCTTGGCAATGATGAAGAGGAGAAAGAAGGGGAGTTGGTTGTTTCCAAAGTTTTCTACCAAACACAACCTAGACAATGTGGTTCACTCTTGATCAATAACAAAGACTCATCAACAACAACACTTGTCAAGGCTCATCATCATCATCAAAGCATGCATGAGGTCATTAATAATAATAATAATAATAATAATAATAATAATAACAATAATAATAAAAATAAAAATAATAATGGGATTGTTGAGTATTACCATTCAAATTTCATATCATTTGAAAGCCGGGGACACCAACAAAGATCTAGTGGTGCTCAAGTTGTCATTTCAAATTTCCCTGTCCATGAAGGTACTCCTAATTACCATCCCTTGAATTGA 936 0.391 MTECNENENNNNHGNIMVEGRKDSLIRTCPTCGHHIKCQDQGGGIHDLPGLPAGVKFDPTDQEILEHLEAKVRSDIHKLHPLIDEFIPTLEGENGICYTHPENLPGVSKDGLIRHFFHRPSKAYTTGTRKRRKVNSDEDGNETRWHKTGKTRPVYINGKLKGYKKILVLYTNYGKQRKAEKTNWVMHQYHLGNDEEEKEGELVVSKVFYQTQPRQCGSLLINNKDSSTTTLVKAHHHHQSMHEVINNNNNNNNNNNNNNNKNKNNNGIVEYYHSNFISFESRGHQQRSSGAQVVISNFPVHEGTPNYHPLN 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60498g00012 311 FunFam NAC domain-containing protein 73 60 214 - -
Stsc60498g00012 311 MobiDBLite consensus disorder prediction 246 267 - -
Stsc60498g00012 311 SUPERFAMILY NAC domain 46 210 IPR036093 GO:0003677|GO:0006355
Stsc60498g00012 311 Pfam No apical meristem (NAM) protein 52 191 IPR003441 GO:0003677|GO:0006355
Stsc60498g00012 311 MobiDBLite consensus disorder prediction 130 146 - -
Stsc60498g00012 311 MobiDBLite consensus disorder prediction 124 146 - -
Stsc60498g00012 311 ProSiteProfiles NAC domain profile. 51 210 IPR003441 GO:0003677|GO:0006355
Stsc60498g00012 311 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 24 268 IPR044799 GO:0003700
Stsc60498g00012 311 Gene3D NAC domain 60 214 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60498g00012 Stsc-Chr60498 110195 113494 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60498g00012 1 217 NAC Transcription Factor Family AT4G28500 71.806 2.53e-116 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc60498g00012 NAM 2.8e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60498g00012 - - gmx:100797459 476.478