Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60498g00010 ATGCTTTATTTCATTTTCATCATCACCACCTTCCTCCTCTTATTCATTCATTCACAACTAACTCTCTCACTAAACCAAGAAGGCCTCCTTCTACTCCAATTCAAGAACCACCTAACTGACCGTAACAATGCCCTATCTTCATGGAACCCTTCAGACACAACCCCGTGCCATTGGTTGGGTGTCACGTGCCGCAACCCCACCAAAACTCCCGTAACCGTAACCGTCACCGCTCTCAACCTTTCCTCCGTCGCTCTCATCGGCCCACTCCCAGCCATCCCTCTCTGCCGCCTCCCCGCCCTCACCACCCTCTCCATCACCGACAGCTTCATCTCCGCCACCATTCCCCAATCCCTCTCCGCCTGCCGCCGTCTCCGCCACCTCGACCTCTCCCAAAATTATCTCGTCGGAACCATCCCACCCTCCCTCTACCTCCTCACCGACCTCCGCCACCTCGACCTCTCCTTCAACAACCTCTCCGGCGACATCCCCGCCCAACTCAGCCAACTTCACCGCCTCGAATACCTTGACTTAGTGAGCAACTTCCTCGACGGACCATTCCCGAGCTCGTTAACCAACTTGAAGTCACTCAAGTACCTTCGCTTAGCATACAACCTCTTCGCGCCGAGTCAGCTCCCGAGTCAACTCGGCCAACTCGCCAACCTCAAAGTTCTCTGGCTTTCCAGTTGCAACCTCATAGGTCCAATCCCTAACTCCATCGGGAACCTCACGTGCCTCGAGAATCTCGACCTCTCCAAGAACAAGCTCACTGGACAGATACCGGAATCAGTATCAGGGTTGAATAGAGTGATCCAGATTGAGCTATACGAAAACGCGCTCACCGGCGCGTTGCCGAGGGGGTTGGGGAACCTAATGCGCCTCCGGCAATTCGACGCGTCGGACAACAAGTTAACTGGAACGATCCCCGAGGAGCTGTGCGAATTGCCACTGGATTCCCTTAATTTGTACAATAACAGTCTAGAAGGTTCGTTACCGGCGAGCATTGCGCGTTCTCCGAAACTCCATGAACTCAAATTATTCAGAAACGATCTCGTTGGAAGCTTGCCGAGTGAACTCGGTAGTAACTCGCAGCTACACATTATTGACGTATCGTTTAACCGTCTTTCCGGCGTATTGCCGGTGGGATTGTGCCGGTGGGGAAAGTTGGAGGAGTTGCTCATGTTGTCCAATTCTTTTTCCGGGAAAATTCCAGAGAGCCTTGGAAACTGCACGAGCCTAAGGAGGGTTAGGATTGGGAACAATAACTTGTCTGGAAAGGTACCTGATGCATTTTGGGCTTTGCCTCATTTGAATTTGCTTGAGCTTAATTCTAATTCGTTTTCTGGTTCGATTTCGAATTTGATATCCTTTGCTTATAATCTGTCGCATTTGAGAATATCGGATAACCAGTTCAGTGGGTTGATTCCTGATGCAATTGGATCATTGAGTAACCTTTTAGAATTTCATGGTGGCAATAATAAGCTTTCTGGTAGATTCCCTGATAGCATGGCCAAACTGATCCAGTTGGGTACTCTTGATTTGAGTTATAATGAAATGTCTGGTGAAATTCCGGGTTGGATTAGCGGTTTGAATAAGCTCATTGAGCTTAATTTGGCACACAATAGTTTTGGTGGGACAATTCCAAAGGAATTAGGAAGCTTGTCTGAGCTCTCTTTCCTTGATCTTTCTAATAACCAACTTTCCGGTAAGATTCCATTAGAGCTGCAGAATTTGAAGCTTAATGAGATCAACTTGTCATACAATCGGCTTTCTGGGGATGTTCCGCCTCATTATGCCACTAAGAATTATGAAATGAGTTTTTTAGGAAATCCTGAACTTTGTGTTGAGGAATCTGCAAAATGTCATGGCTCAAAGGGGAGACATTACCGGATGTATGTCTGGATTTTTCCACTTGCTACAATCTCGTTCGTCCTTGGGGTGGCTCTGTTTTACCTGAGTCACAAGAAGTTCAGAAATAAGAAGAAATGTTCCAATGTTTCAAAGTGGAGGTCGTTTTATAAGCTGGCCTTTGATGAGTTTGAGATTGTGAAATTGATGAGTGAAGATAATGTGATTGGAAGTGAATCATCTGGGAAGGTCTACAAGGTTGTTCTAAGCAGTGGTGATGTCGTGGCTGTCAAAAAACTATGGGGAGCAACCAATAACGGAAATAGAACTGGGTTTGTTGGTTCTGAAAAAGATGAATTTGATGTTGAAGTTGAAACACTAGGAAAGATAAGGCACAAAAATATTGTAAGGTTGTGGTGTTGCACCAACAATGGTAACAGCAGGCTCCTGGTTTATGAATATATGCCGAATGGTAACTTGACTGATATGTTGAAGAGTAGCAAGAAAAGCTTGTTGGATTGGCCAACTAGGTACAAGATTGCAGTTGATGCTGCTGAGGGGCTTTCTTATTTGCATCACGGTATTGTGCCCCCCATTGTTCATAGGGACGTAAAATCGAACAATATATTGCTTGACAATGAGTTCCGAGCAAAAGTTGCTGATTTTGGAGTTGCCAAAGTTGTTAGGGAAACTAGCCAAGGGGCAGAGTCCATGTCTATAATTGCAGGCTCTTATGAATATGCATATACTCTTCGGGTGAACGAAAAGAGTGACATTTTTAGCTTTGGTGTAGTCATTTTGGAGTTAGTAACCGGAAAGCCCCCTATTCATGCAGATTATGGGGAAAGTGATCTGGTAAAATGGGTCTTGTCCTTGTTGGAACAGAATGAAATGGATCATGTAATTGATCCTGGCCTTGATTCAAAATACAAGGAGGAAATCAGCAAGGTACTTAATGTAGGGCTTCTCTGCACAAGCGTTCTTCCTATAAACCGCCCTGCAATTTGGAGGGTGGTGAAAATGCTTAAGGAAGCAGCAACGGTTCCCAGATCCCAAAGCATGATGGAGGGCATTCTTCCAGGATTTCATATTGAGCTTTTTAGTGGTGAATTTCTTCATAGATCAGTTACATTCAGAAGGATTTGGACATACTCACTAGGGTGTCACATCGAGTAA 3021 0.4565 MLYFIFIITTFLLLFIHSQLTLSLNQEGLLLLQFKNHLTDRNNALSSWNPSDTTPCHWLGVTCRNPTKTPVTVTVTALNLSSVALIGPLPAIPLCRLPALTTLSITDSFISATIPQSLSACRRLRHLDLSQNYLVGTIPPSLYLLTDLRHLDLSFNNLSGDIPAQLSQLHRLEYLDLVSNFLDGPFPSSLTNLKSLKYLRLAYNLFAPSQLPSQLGQLANLKVLWLSSCNLIGPIPNSIGNLTCLENLDLSKNKLTGQIPESVSGLNRVIQIELYENALTGALPRGLGNLMRLRQFDASDNKLTGTIPEELCELPLDSLNLYNNSLEGSLPASIARSPKLHELKLFRNDLVGSLPSELGSNSQLHIIDVSFNRLSGVLPVGLCRWGKLEELLMLSNSFSGKIPESLGNCTSLRRVRIGNNNLSGKVPDAFWALPHLNLLELNSNSFSGSISNLISFAYNLSHLRISDNQFSGLIPDAIGSLSNLLEFHGGNNKLSGRFPDSMAKLIQLGTLDLSYNEMSGEIPGWISGLNKLIELNLAHNSFGGTIPKELGSLSELSFLDLSNNQLSGKIPLELQNLKLNEINLSYNRLSGDVPPHYATKNYEMSFLGNPELCVEESAKCHGSKGRHYRMYVWIFPLATISFVLGVALFYLSHKKFRNKKKCSNVSKWRSFYKLAFDEFEIVKLMSEDNVIGSESSGKVYKVVLSSGDVVAVKKLWGATNNGNRTGFVGSEKDEFDVEVETLGKIRHKNIVRLWCCTNNGNSRLLVYEYMPNGNLTDMLKSSKKSLLDWPTRYKIAVDAAEGLSYLHHGIVPPIVHRDVKSNNILLDNEFRAKVADFGVAKVVRETSQGAESMSIIAGSYEYAYTLRVNEKSDIFSFGVVILELVTGKPPIHADYGESDLVKWVLSLLEQNEMDHVIDPGLDSKYKEEISKVLNVGLLCTSVLPINRPAIWRVVKMLKEAATVPRSQSMMEGILPGFHIELFSGEFLHRSVTFRRIWTYSLGCHIE 1006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60498g00010 1006 ProSiteProfiles Protein kinase domain profile. 685 963 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60498g00010 1006 Pfam Leucine rich repeat 245 303 IPR001611 GO:0005515
Stsc60498g00010 1006 Pfam Leucine rich repeat 98 158 IPR001611 GO:0005515
Stsc60498g00010 1006 Pfam Leucine rich repeat 511 566 IPR001611 GO:0005515
Stsc60498g00010 1006 SMART LRR_typ_2 193 218 IPR003591 -
Stsc60498g00010 1006 SMART LRR_typ_2 145 169 IPR003591 -
Stsc60498g00010 1006 SMART LRR_typ_2 242 266 IPR003591 -
Stsc60498g00010 1006 SMART LRR_typ_2 553 576 IPR003591 -
Stsc60498g00010 1006 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 770 964 - -
Stsc60498g00010 1006 FunFam Leucine-rich receptor-like protein kinase family protein 211 309 - -
Stsc60498g00010 1006 SMART serkin_6 685 943 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60498g00010 1006 Gene3D Phosphorylase Kinase; domain 1 669 769 - -
Stsc60498g00010 1006 ProSitePatterns Serine/Threonine protein kinases active-site signature. 814 826 IPR008271 GO:0004672|GO:0006468
Stsc60498g00010 1006 Pfam Leucine rich repeat N-terminal domain 25 63 IPR013210 -
Stsc60498g00010 1006 Gene3D Ribonuclease Inhibitor 192 316 IPR032675 -
Stsc60498g00010 1006 SUPERFAMILY L domain-like 44 388 - -
Stsc60498g00010 1006 FunFam Receptor-like protein kinase HSL1 315 622 - -
Stsc60498g00010 1006 ProSiteProfiles Leucine-rich repeat profile. 555 578 IPR001611 GO:0005515
Stsc60498g00010 1006 Gene3D Ribonuclease Inhibitor 24 189 IPR032675 -
Stsc60498g00010 1006 Gene3D Ribonuclease Inhibitor 317 624 IPR032675 -
Stsc60498g00010 1006 SUPERFAMILY Protein kinase-like (PK-like) 684 957 IPR011009 -
Stsc60498g00010 1006 SMART LRR_sd22_2 145 160 - -
Stsc60498g00010 1006 SMART LRR_sd22_2 169 195 - -
Stsc60498g00010 1006 SMART LRR_sd22_2 553 574 - -
Stsc60498g00010 1006 SMART LRR_sd22_2 290 313 - -
Stsc60498g00010 1006 SMART LRR_sd22_2 242 268 - -
Stsc60498g00010 1006 Gene3D Transferase(Phosphotransferase) domain 1 770 971 - -
Stsc60498g00010 1006 SUPERFAMILY L domain-like 317 595 - -
Stsc60498g00010 1006 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 238 959 - -
Stsc60498g00010 1006 PRINTS Leucine-rich repeat signature 553 566 - -
Stsc60498g00010 1006 PRINTS Leucine-rich repeat signature 245 258 - -
Stsc60498g00010 1006 Pfam Leucine Rich Repeat 459 481 IPR001611 GO:0005515
Stsc60498g00010 1006 Pfam Leucine Rich Repeat 220 242 IPR001611 GO:0005515
Stsc60498g00010 1006 Pfam Protein kinase domain 687 909 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60498g00010 1006 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 24 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60498g00010 Stsc-Chr60498 101488 106146 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60498g00010 21 959 Receptor kinase-like Gene Family AT1G28440 55.532 0.0 1008
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc60498g00010 Pkinase 1.5e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60498g00010 - - ccaj:109805711 1116.68