Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60498g00008 ATGGGTGTTGACTATTACAAGATTTTGCAGGTCGATAAGAATGCAAAGGATGAAGACTTGAAGAAGGCTTATAGGAAACTTGCCATGAAGTGGCACCCTGATAAGAACCCCAACAACAAAAAAGATGCTGAAGCTAAGTTCAAGCAAATTTCAGAAGCCTACGAGGTTCTTAGTGATCCTCAGAAGAGAGCTATCTATGATCAGTATGGGGAGGAGGGGCTTAAGGGGCAGGTACCGCCTCCTGATGCTGGTGGACCTAGGGCTGGGGCTGGTGGAGGAACTACATTCTTTTCGACCGGAGATTTCCCGGGAGGATCATTCCGGTTCAATCCCCGGAGTGCGGACGACATTTTCGCCGAATTCTTTGGATCTTCAAGCCCATTTGGGGGGAGAGGAGGAGGTGGCGGCGGCATGAGGTCAAGATTTTCTAGTGGAATGTTTGGTGATGATGATATGTTTGGTTCCTTTGGTGAAGGAGGAAGGGTGCATGTGAGCCATGGCGCGCCTCGCAAAGCGGCTACCATTGAGAACAAGTTGCCCTGCACCCTTGAGGAGATTTACAGAGGGACTACAAAGAAGATGAAGATCTCTAGAGAAATTGTGGATGCCAGTGGCAAAAGCATGCCGGTAGAAGAGATCTTGACCATCAACGTTAAGCCCGGTTGGAAGAAGGGCACCAAGATCACCTTCCCGGAGAAGGGAAACGAGCAGCTGAATGTGACGCCGGCAGACCTCGTCTTCGTCATAGAAGAAAAACCGCACAGCGTCTTCACTCGCGACGGAAACGATCTTATCGTGACGCAGAAGATCTCCCTCGCGGAAGCCTTGATCGGTTACACGGTGAGGCTCACCACACTGGATGGCAGAACCTTAACTATACCAATCAACAGTGTTATACATCCAAACTATGAGGAGGTTGTTCCTAGAGAAGGCATGCCATTGCCAAAGGATCCATCAAAGAAGGGGAACTTGAGAATAAGGTTCAACATTAAGTTCCCAACTAGGCTCACTGATGAACAGAAATCAGGAATTAAGAAACTCTTGGCTGCATGA 1053 0.4881 MGVDYYKILQVDKNAKDEDLKKAYRKLAMKWHPDKNPNNKKDAEAKFKQISEAYEVLSDPQKRAIYDQYGEEGLKGQVPPPDAGGPRAGAGGGTTFFSTGDFPGGSFRFNPRSADDIFAEFFGSSSPFGGRGGGGGGMRSRFSSGMFGDDDMFGSFGEGGRVHVSHGAPRKAATIENKLPCTLEEIYRGTTKKMKISREIVDASGKSMPVEEILTINVKPGWKKGTKITFPEKGNEQLNVTPADLVFVIEEKPHSVFTRDGNDLIVTQKISLAEALIGYTVRLTTLDGRTLTIPINSVIHPNYEEVVPREGMPLPKDPSKKGNLRIRFNIKFPTRLTDEQKSGIKKLLAA 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60498g00008 350 SUPERFAMILY HSP40/DnaJ peptide-binding domain 169 263 IPR008971 GO:0006457|GO:0051082
Stsc60498g00008 350 SUPERFAMILY HSP40/DnaJ peptide-binding domain 256 342 IPR008971 GO:0006457|GO:0051082
Stsc60498g00008 350 Gene3D DnaJ domain 3 135 IPR036869 -
Stsc60498g00008 350 PRINTS DnaJ domain signature 24 39 IPR001623 -
Stsc60498g00008 350 PRINTS DnaJ domain signature 6 24 IPR001623 -
Stsc60498g00008 350 PRINTS DnaJ domain signature 42 62 IPR001623 -
Stsc60498g00008 350 PRINTS DnaJ domain signature 62 81 IPR001623 -
Stsc60498g00008 350 Pfam DnaJ C terminal domain 175 333 IPR002939 -
Stsc60498g00008 350 CDD DnaJ 4 59 IPR001623 -
Stsc60498g00008 350 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 348 - -
Stsc60498g00008 350 SUPERFAMILY Chaperone J-domain 3 103 IPR036869 -
Stsc60498g00008 350 FunFam Dnaj homolog subfamily b member 171 252 - -
Stsc60498g00008 350 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Stsc60498g00008 350 FunFam DnaJ subfamily B member 13 3 132 - -
Stsc60498g00008 350 SMART dnaj_3 3 62 IPR001623 -
Stsc60498g00008 350 CDD DnaJ_C 173 336 - -
Stsc60498g00008 350 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Stsc60498g00008 350 Gene3D - 173 252 - -
Stsc60498g00008 350 Gene3D - 254 334 - -
Stsc60498g00008 350 Pfam DnaJ domain 4 67 IPR001623 -
Stsc60498g00008 350 FunFam DnaJ subfamily B member 13 254 334 - -
Stsc60498g00008 350 MobiDBLite consensus disorder prediction 72 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60498g00008 Stsc-Chr60498 91219 93700 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60498g00008 5 69 C2H2 Transcription Factor Family AT1G74250 37.681 2.69e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60498g00008 K09510 - gmx:100797487 555.058