Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60498g00002 ATGCTTGCTGTTTCTACTTTGGCGAGTACAAGAAGAGATGAAGAAATGGAGAGCTTCAACTCAATTGGGGCCTCATTAAAGGATGATGAATTTGCCGAACTCTCAGAAGCAAGTTTGTTGGAGAGCATCAACTTTGATGATCTCTTTGTCGGTATCAATATTGATGAGGATGTGTTGCCAGATTTGGAGATGGACATCGACATCTTTGCGGAATTCTCTATGGACATCCCTACCTCTACCATATCCGGTGATGGAAGTAGAGAAGAATCTTCAATTGAGAATTGCTTTGGCAAAGACAATGAATTGAATACTAATTCAAAGAAGAATGAAGAATATATAGTAGAAAAAACCAAAGATCAATTGGGTTTTAGCCAGGATTCAGAGAAGAGTAGAGGGGAAGAGATAGTGAATGAAAGAGATGACTCCATAGTTGTGAATCCTCCAACAAAGGATGGTGGAAAAGGAAGAAAATCATCCTCTCAATCCAAGAATAATAATCCTCAAGGGAAGATTAGAAAAGTCAAGGTAGATTGGACCCCAGAGTTGCATAGAAGATTTGTACAAGCTGTGGAACAACTTGGAGTAGATAAGGCAGTACCTTCTAGGATTTTGGAGATTATGGGAATTGATTGCCTCACTCGCCATAATATTGCCAGTCATCTTCAAAAATATAGATCCCATAGGAAACATTTACTTGCACGTGAAGCTGAAGCAGCAAATTGGAATCAAAGAAGACACATCTATGGAGGAGGAGGAGGAGGATTAGGGAAGAGAGATATGAATCCATGGCTACCACCACCACCAACCATGGGTTTCCCTCCAATCACTTCAATGCACCATTTTAGACCACTTCATGTCTGGGGACATCCCTCCATCGACCAATCTTTTATACACATGTGGCCTAAAAATCCTACCCATTCGCCATCGCCGCGGCGACCGTCACCTCGGCCTTGGGTGCCACCGGCGGGTCCGCTTCCCTTGCCTCCTGACCCTTCCTCATTTTGGCATCCTCAGCACCAACCGGCTCCAAACACACTAACAGCAGGAACACCATGTTTTCCACAGCCTCTGACAACAACGAGGTATGGACCTCCAGCTATGGCAGGCATTATTCCAGCAACAGCAGCACATGGAATGTACAAAGCAGCAGATTCTACCATTAATGGCGTCTCAAGCTCCAACCCCATCTTTGACTTCCATCCGTCAAAGGAGAGCATAGATGCAGCAATTGGAGATGTTCTAGCAAAGCCATGGCAGCCACTACCTCTTGGACTTAAAGCTCCAGCACTTGACAGTGTTCTAACTGAATTACAAAGACAAGGAATTCCAAATATTCCACCCTCTTGTGCTTGA 1353 0.4412 MLAVSTLASTRRDEEMESFNSIGASLKDDEFAELSEASLLESINFDDLFVGINIDEDVLPDLEMDIDIFAEFSMDIPTSTISGDGSREESSIENCFGKDNELNTNSKKNEEYIVEKTKDQLGFSQDSEKSRGEEIVNERDDSIVVNPPTKDGGKGRKSSSQSKNNNPQGKIRKVKVDWTPELHRRFVQAVEQLGVDKAVPSRILEIMGIDCLTRHNIASHLQKYRSHRKHLLAREAEAANWNQRRHIYGGGGGGLGKRDMNPWLPPPPTMGFPPITSMHHFRPLHVWGHPSIDQSFIHMWPKNPTHSPSPRRPSPRPWVPPAGPLPLPPDPSSFWHPQHQPAPNTLTAGTPCFPQPLTTTRYGPPAMAGIIPATAAHGMYKAADSTINGVSSSNPIFDFHPSKESIDAAIGDVLAKPWQPLPLGLKAPALDSVLTELQRQGIPNIPPSCA 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60498g00002 450 MobiDBLite consensus disorder prediction 337 352 - -
Stsc60498g00002 450 Pfam Myb-like DNA-binding domain 176 225 IPR001005 -
Stsc60498g00002 450 MobiDBLite consensus disorder prediction 118 140 - -
Stsc60498g00002 450 MobiDBLite consensus disorder prediction 306 336 - -
Stsc60498g00002 450 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 170 229 IPR017930 -
Stsc60498g00002 450 MobiDBLite consensus disorder prediction 153 169 - -
Stsc60498g00002 450 Gene3D - 171 231 - -
Stsc60498g00002 450 NCBIfam myb-like DNA-binding domain, SHAQKYF class 173 227 IPR006447 GO:0003677
Stsc60498g00002 450 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 449 IPR044825 GO:0003700|GO:0045893
Stsc60498g00002 450 SUPERFAMILY Homeodomain-like 171 230 IPR009057 -
Stsc60498g00002 450 FunFam Two-component response regulator 169 232 - -
Stsc60498g00002 450 MobiDBLite consensus disorder prediction 300 352 - -
Stsc60498g00002 450 MobiDBLite consensus disorder prediction 118 173 - -
Stsc60498g00002 450 MobiDBLite consensus disorder prediction 78 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60498g00002 Stsc-Chr60498 20410 26972 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60498g00002 14 309 G2-like Transcription Factor Family AT5G44190 43.000 1.39e-54 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Stsc60498g00002 Myb_DNA-binding 5.9e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60498g00002 - - aip:107629821 517.309