Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60497g00008 ATGGTGAGGGGAAAAACTCAGATGAGGCGCATAGAGAACGCAACAAGCAGGCAAGTGACGTTCTCAAAGAGGCGAAATGGTTTGCTTAAGAAGGCATTTGAGCTTTCTGTTCTTTGTGATGCTGAGGTTGCTCTCATCATCTTCTCTCCAAGAGGCAAGCTTTATGAATTTGCTAGCTCCAGCATGCAGGAAACCATTGAACGATATCGAAGGCATACACGGACTACTCAATCAACACCTAGATCGGATGAACAAAATATGCAGCACTTAAAGCAAGAAACAGCAAGCTTGACGAAGAAGATTGAAATTCTTGAAGCTTCAAAAAGAAAATTGCTGGGAGAAGGCTTGGGATCATGCACCTTAGAAGAACTGCAGCAGATAGAACAACAACTGGAAAAGAGTGTAACCACTGTCAGAGCTAAAAAGACGCAGGTTTATAAGGAACAAATTGACCAACTAAAGGAAAAGGAAAAAGCTCTAATTGCTGAAAATGCCAGACTCTCAGAACAGTATGGCATTCATCATGCAGGAAGTAAGGATCAAAGAGAAAATGAACAACAACAACTCTATGCAGAAAGTAGTCCAAGTTCAGATGTGGAGACTGAATTATTCATTGGACTACATAGGTCTAATTGA 636 0.4104 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFASSSMQETIERYRRHTRTTQSTPRSDEQNMQHLKQETASLTKKIEILEASKRKLLGEGLGSCTLEELQQIEQQLEKSVTTVRAKKTQVYKEQIDQLKEKEKALIAENARLSEQYGIHHAGSKDQRENEQQQLYAESSPSSDVETELFIGLHRSN 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60497g00008 211 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc60497g00008 211 MobiDBLite consensus disorder prediction 173 201 - -
Stsc60497g00008 211 Coils Coil 121 141 - -
Stsc60497g00008 211 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Stsc60497g00008 211 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 180 - -
Stsc60497g00008 211 CDD MADS_MEF2_like 3 73 IPR033896 GO:0000977|GO:0045944
Stsc60497g00008 211 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Stsc60497g00008 211 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Stsc60497g00008 211 Coils Coil 143 170 - -
Stsc60497g00008 211 Pfam K-box region 83 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc60497g00008 211 Coils Coil 87 107 - -
Stsc60497g00008 211 Gene3D - 14 96 IPR036879 GO:0003677|GO:0046983
Stsc60497g00008 211 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Stsc60497g00008 211 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Stsc60497g00008 211 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Stsc60497g00008 211 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Stsc60497g00008 211 FunFam MADS-box protein SOC1 14 95 - -
Stsc60497g00008 211 SUPERFAMILY SRF-like 3 83 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60497g00008 Stsc-Chr60497 64776 71213 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60497g00008 1 158 MADS-box Gene Family AT2G45660 78.481 5.61e-88 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Stsc60497g00008 K-box 1.4e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60497g00008 - - gmx:100037477 326.635