Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60497g00004 ATGGCTGGTCTAAGATCACAATCCATCTTTACACTTTCCTTTCTCTCCTTTCTTGTTTTGTCAAATAATGCCATTAACACCGATGAAAGTACTTACCTCTTGAAGCTTAGGGAAGCCATAACACCACCTCCCTCCCAGTGGTTCCAAACCACAGACATGTGCCAATGGATCGGCATCGTTTGCAACTACTACGACGACTACTCTCCTTCATCTTTCGTCGAAGCCATCGATCTCACTTCACTGTCCCTAACTGGAGAGTTTCCTCCATACTTTACCAATTCCCTCTTCCACCTCAAATTTCTCCGTCTTCAAAACAACTCTTTCCATGGCCCTCTTCCCTCTCTCGCTTCCCTACCAGATCTTCAGGAGGTCTACCTTGACCACAACGACTTCACCTCTATCCCCGATAATTGCTTCCAAGGTCTATTCAATCTCAAGAATCTCAGTTTAAGCTACAATCTTAACCTTCAGCAATGGACGTTCCCCACTTCTTTGACTAATTCCTTGAAACTCACCAATCTTGACCTCGCAGCCACAAATCTCATAGGCTCCTTGCCGGAGATTTTCACTTCCTTCCCCGCACTCCGCCGTCTTGATCTTTCTAACAACAAACTCGGCGGTCCCTTGCCGAGTTCTCTTGAATTCTCCAAGATTCAAAACCTAATTCTTCACACCAGTAATAAATTTTCTGGCACTATAAATGTTCTCTCATCCATGACCGAACTGACCGAGGTGTTGCTTCAGGGGAACAGTTTCAACGGTCAAATTCCGGATCTGTACAACTGCACCAAATTGCAGGTTCTGATGCTTCAGGACAAGAAGTTCACAGGTGCAGTTCCACAGTCTCTGATGAATCTATCTAGCTTGCGAAACGTTTCCCTGGCTAATAATTGGTTACAGGGTCCTCTGCCGGTGTTCGACGAGCACGTGGCGGTGGCTCTTGGTGGTAACGGTTTCTGTTTAGACCATGATGGGCCTTGTGACAAGGCAGTTACAACTTTGCTTGAGGTTGCTGCAGGGTTTGGGTATCCCTATCTGTTGGCCCGTTCTTGGCAAGGGAATAATCCTTGCGATGGTTGGAAATTCATTTGGTGCGATAAATGGGGTAAGATTAGGACTGTAAACTTGTCAAAATTGAACTTGACAGGAGTTATCTCACCTGCATTTGGTGATTTAATTGATTTGTGGTACTTGTATCTCGGTGGCAACAATTTAAGAGGTTTGATACCTAAGAGCTTGGCAACTCTGCCTCAGCTTAAGGTTCTAGATGTTTCCAATAACAGTTTGTCTGGAAAGGTTCCAAGATTCTCATCAACAGCTCTGTTGTTCATTGCTAAAGGTAAGTCTTTGCTTGATGATGATCACCTTTCTCAAACAAAGGGTACAACTTCAACTTCATCCTTGCCTCCATGGCTTGCAGGGGTACTAGCAGGTGGTGTTGGACTTATGATGGTAATGTATCTTATGATTATTGCTAATAATCGTAAGAGGTGTTTTAGTTTACTGCAGAAGATGATGATATGGAAGAAAACAAGCATTGTTCTAGACCACAATGTCGAAGAGTTCATAAAGAGTTATCAATCAATGACTCTAAAGCGATATAGTTACAGCGAACTAAAAAAGATAACAAATTCATTCCATGAAAGTTTAGGTCAAGGGGGATATGGTATTGTGTATAAAGCGAGCTTGGTTGATGGTCGAAAAGTGGCCGTGAAGATACTGAAAGAGTCGAAGGGAAGAGGCGAAGAATTTGTAAATGAGGTTATAACTATTGGTAGAACATCCCATGTGAATATTGTTTCACTTATGGGATTTTGTTATGAGATGAACAAAAGAGCACTCATCTATGAATTTATGTCTAATGGCTCTTTGGATAAGTTCATTTATAAAAAAGGATCTTCCATCTGTGCTTTGAAATGGAGCACATTGTATAGAATCACAATTGGTATTGCTCGAGGATTAGAATATTTGCATCGAGGATGTAACACAAGAATTTTGCATCTTGATATGAAGCCTCAAAATATTCTTTTAGATGAAAATTTTGTTCCAAAAATTGCTGACTTTGGATTAGCCAAAATTTGTAAAAAGGACAAAAGTGTCGTGTCTATATCAGGCGCAAGAGGAACTCCAGGATTCATTGCACCGGAAGTACTCAGCAGAGCATATGGTGGAGTTTCTCACAAGTCAGATGTATATAGTTATGGTATGTTAATTCTCGAAGTGATTGGTGGAAGAAAGAATTATGATAGTGGAAGATCAAATACTAGTGAAATGTATTTTCCGGATTGGATTTATAAGAGCTTGGAGCAAGGCAATATTCTTACAAGATGTTTGCCCAGCACAGAGGAAGAAAATGACATGATAATGAAGATTACTTTAGTGAGTTTGTGGTGTATTCAAACAAATCCAAAAAATCGACCATCCATGGGAAAAGTAATAGAGATGTTGGAAGGATCACTTGAGTCAATACCATATCCTCCAAAACCTGTCTTGCATTCTCCTGAAAGGCTTCCCATGAGGTTTGAAGATTTTGAAGATTTATCTAGTAGTGCACATGAATCAAATTCACTAGCTACAGAGAATAATAGTTCCATTAAAAATATGTAA 2607 0.4062 MAGLRSQSIFTLSFLSFLVLSNNAINTDESTYLLKLREAITPPPSQWFQTTDMCQWIGIVCNYYDDYSPSSFVEAIDLTSLSLTGEFPPYFTNSLFHLKFLRLQNNSFHGPLPSLASLPDLQEVYLDHNDFTSIPDNCFQGLFNLKNLSLSYNLNLQQWTFPTSLTNSLKLTNLDLAATNLIGSLPEIFTSFPALRRLDLSNNKLGGPLPSSLEFSKIQNLILHTSNKFSGTINVLSSMTELTEVLLQGNSFNGQIPDLYNCTKLQVLMLQDKKFTGAVPQSLMNLSSLRNVSLANNWLQGPLPVFDEHVAVALGGNGFCLDHDGPCDKAVTTLLEVAAGFGYPYLLARSWQGNNPCDGWKFIWCDKWGKIRTVNLSKLNLTGVISPAFGDLIDLWYLYLGGNNLRGLIPKSLATLPQLKVLDVSNNSLSGKVPRFSSTALLFIAKGKSLLDDDHLSQTKGTTSTSSLPPWLAGVLAGGVGLMMVMYLMIIANNRKRCFSLLQKMMIWKKTSIVLDHNVEEFIKSYQSMTLKRYSYSELKKITNSFHESLGQGGYGIVYKASLVDGRKVAVKILKESKGRGEEFVNEVITIGRTSHVNIVSLMGFCYEMNKRALIYEFMSNGSLDKFIYKKGSSICALKWSTLYRITIGIARGLEYLHRGCNTRILHLDMKPQNILLDENFVPKIADFGLAKICKKDKSVVSISGARGTPGFIAPEVLSRAYGGVSHKSDVYSYGMLILEVIGGRKNYDSGRSNTSEMYFPDWIYKSLEQGNILTRCLPSTEEENDMIMKITLVSLWCIQTNPKNRPSMGKVIEMLEGSLESIPYPPKPVLHSPERLPMRFEDFEDLSSSAHESNSLATENNSSIKNM 868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60497g00004 868 ProSitePatterns Protein kinases ATP-binding region signature. 550 572 IPR017441 GO:0005524
Stsc60497g00004 868 Pfam Leucine rich repeat 371 429 IPR001611 GO:0005515
Stsc60497g00004 868 Pfam Leucine rich repeat 120 181 IPR001611 GO:0005515
Stsc60497g00004 868 PANTHER OSJNBA0070M12.3 PROTEIN 11 822 - -
Stsc60497g00004 868 SUPERFAMILY Protein kinase-like (PK-like) 522 817 IPR011009 -
Stsc60497g00004 868 ProSiteProfiles Protein kinase domain profile. 544 820 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60497g00004 868 Gene3D Ribonuclease Inhibitor 329 448 IPR032675 -
Stsc60497g00004 868 MobiDBLite consensus disorder prediction 848 868 - -
Stsc60497g00004 868 Gene3D Phosphorylase Kinase; domain 1 516 618 - -
Stsc60497g00004 868 Pfam Leucine Rich Repeat 195 214 IPR001611 GO:0005515
Stsc60497g00004 868 Pfam Leucine rich repeat N-terminal domain 330 366 IPR013210 -
Stsc60497g00004 868 Pfam Leucine rich repeat N-terminal domain 28 62 IPR013210 -
Stsc60497g00004 868 FunFam Leucine-rich repeat receptor-like kinase 329 454 - -
Stsc60497g00004 868 PRINTS Leucine-rich repeat signature 416 429 - -
Stsc60497g00004 868 PRINTS Leucine-rich repeat signature 195 208 - -
Stsc60497g00004 868 SMART LRR_typ_2 192 216 IPR003591 -
Stsc60497g00004 868 SMART LRR_typ_2 118 141 IPR003591 -
Stsc60497g00004 868 SMART LRR_typ_2 392 415 IPR003591 -
Stsc60497g00004 868 SMART LRR_typ_2 416 438 IPR003591 -
Stsc60497g00004 868 Gene3D Transferase(Phosphotransferase) domain 1 619 823 - -
Stsc60497g00004 868 MobiDBLite consensus disorder prediction 850 868 - -
Stsc60497g00004 868 ProSitePatterns Serine/Threonine protein kinases active-site signature. 665 677 IPR008271 GO:0004672|GO:0006468
Stsc60497g00004 868 FunFam S-receptor-like serine/threonine-protein kinase 515 618 - -
Stsc60497g00004 868 SUPERFAMILY L domain-like 35 439 - -
Stsc60497g00004 868 Gene3D Ribonuclease Inhibitor 26 318 IPR032675 -
Stsc60497g00004 868 Pfam Protein kinase domain 547 813 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60497g00004 868 SMART serkin_6 544 816 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60497g00004 868 FunFam PR5-like receptor kinase 619 826 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60497g00004 Stsc-Chr60497 39818 43335 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60497g00004 516 849 Receptor kinase-like Gene Family AT5G38280 57.059 6.68e-124 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Stsc60497g00004 Pkinase 6.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60497g00004 - K00924 aip:107635702 829.32