Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60496g00018 ATGATGCCGTTGCCTCAAACATCTTCAGCAACTGAAGCTTCAGAGAAGAACCAGAAGGGGATTAGAAGGGAGAGGCCTTCAGGTGGCTTGGAGCTTGTTCAAGATCCTGCACACTTGCAAATATCATCACCTGAAGCTGAATCAGGTTTTCCCAACAAGAAGCCAAGAATCGAAGCACCCAAATCAGATGCTGAAGATGGAACGGTAGCAGAAAAATCGAGAAAGCTTGTTACTTCTGAGTTGATGGTGCATCCTGGAGAGGATCTGGTCAAGAAGATATTGAAGGCATGGGAAGAAACCGATCAGTGTGGTTGTATACTTTCTGCCACTGGTCACATATCGAGAGCTGAATTTAGCAGACCAAACTCAAATGCTACTCATATATATGAGGGATACTATGAGGTTCTGTCTATGTCTGGACATTATACAATGCTAAGGAATGGTAATGTAGATTCGTGTCTGAGCGTTACTCTGGCTGGTTCTGATGGAAAGGCTTTTGGTGGTAACCGCATCAATAAGTTGATAGCTTCTGGTCCTGTAGCCCTTCTTATGGTGAGCTATGAGAAAGAAAAGGGACCTTCTGCTGCTGCTGTTCCTGCTGCTCCAACAACTGCCAAGGAATCATCTGATAGTGACAAGAAACAGAAGAAGAAAAAGAACAAGAAGAAATTGCAAAATAAGCATTCTGCCCCTACAAGTGGTGTTGGTCGGCTTTCAAACCGATGGTTACTTTTAGAACAACGTGATTAG 750 0.4373 MMPLPQTSSATEASEKNQKGIRRERPSGGLELVQDPAHLQISSPEAESGFPNKKPRIEAPKSDAEDGTVAEKSRKLVTSELMVHPGEDLVKKILKAWEETDQCGCILSATGHISRAEFSRPNSNATHIYEGYYEVLSMSGHYTMLRNGNVDSCLSVTLAGSDGKAFGGNRINKLIASGPVALLMVSYEKEKGPSAAAVPAAPTTAKESSDSDKKQKKKKNKKKLQNKHSAPTSGVGRLSNRWLLLEQRD 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60496g00018 249 Pfam Plants and Prokaryotes Conserved (PCC) domain 81 187 IPR005175 -
Stsc60496g00018 249 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 15 217 IPR039605 GO:0003680
Stsc60496g00018 249 MobiDBLite consensus disorder prediction 1 15 - -
Stsc60496g00018 249 SUPERFAMILY AF0104/ALDC/Ptd012-like 81 188 - -
Stsc60496g00018 249 MobiDBLite consensus disorder prediction 193 249 - -
Stsc60496g00018 249 MobiDBLite consensus disorder prediction 51 71 - -
Stsc60496g00018 249 ProSiteProfiles PPC domain profile profile. 73 211 IPR005175 -
Stsc60496g00018 249 MobiDBLite consensus disorder prediction 1 71 - -
Stsc60496g00018 249 Gene3D - 80 198 - -
Stsc60496g00018 249 CDD DUF296 85 187 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60496g00018 Stsc-Chr60496 118967 120329 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60496g00018 76 187 AT-hook Motif Nuclear Localized (AHL) Family AT5G62260 37.931 4.40e-20 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60496g00018 - - ahf:112706866 127.102