Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60496g00017 ATGAAGAAAAAGAATGCTCTAACAAGTGGTGGCAACTTGATAATATGTCCCATGACTCTTCTTGGGCAATGGAAGGCAGAAATTGAAACTCACGTACAACCTGGATCTCTGTCTCTATATGTTCATTATGGACAAAGTAGGCCAAAAGATGCAAAAAGTCTTTCTCAGAATGATGTTGTAATTACTACATATGGAGTTTTAGCCTCTGAATTTTCCAGTGAGAACACAGAGGATAATGGTGGACTTTTTTCAATTAGGTGGTTCAGAGTGGTTCTTGACGAAGCACATACTATAAAATCTTCTAAGAGTCAAATTTCTATTGCTGCTGCTGCTCTAATTGCTGACAACCGCTGGTGTCTTACTGGCACTCCTATCCAGAACAACCTTGAAGATATTTACAGTCTTCTTCGATTTCTGAGAATAGAGCCTTGGGGTCATTGGGCCTGGTGGAACAAACTTGTTCAGAAACCATTTGAAGGAGGTGATGCCAGAGGGTTGAAGTTAGTTCAGTCCATTTTGAAGCCAATCATGTTGAGGAGAACCAAGTATAGCACAGATCGAGAGGGCAAGCCTATCCTAGTTCTACCTCCGGCTGATATGCAGGTAATTTATTGCGAACAAACAGAAGCTGAGAAGGACTTTTATGAGGCCTTATTTAAAAGATCTAAGGTCAGGTTTGACCACCGAGGTGACACTCAAGAATTTGCTGATCTAAACAAACTAGCTAAGCGCTTCCTTCGAGGAACCCATAATACTTCAGAAGGCGAAGTAAATGATGCACCTTCACTGGCTTATGTTCAAGAAGTAGTTGAAGAGCTACGTAAAGGGGACCAGGGAGAGTGTCCAATATGTCTTGAAGCATTTGAAGATGCAGTGTTGACTCCTTGTGCTCACCGCCTATGCCGGGAATGCCTCTTGGCAAGTTGGCGCAATTCTGCTTCTGGTTTATGTCCTGTTTGCAGAAAAACAGTCAGCCGGCAGGATCTTATTACTGCTCCTACTGATAGTCGGTTTCAAATTGATATTGAGAAGAACTGGGTAGAGTCATGCAAGGTAACTCTTCTATTGCATGAACTTGAAAGTCTTCGGTCATCAGGCTCCAAGAGCATTGTTTTTAGCCAATGGACTGCTTTTCTAGACATTTTGCAGATTCCCTTTGCACGGAATAATATTTCATTTGTTCGTCTTGATGGGACTTTAAACCAGCAGCAGCGGGAGAAAGTGATCAAACAATTCTCAGAAGACGATGAGATACTGGTGTTGTTGATGTCATTAAAAGCTGGAGGAGTGGGTATAAATCTAACAGCGGCTTCAAATGCTTTTGTCATGGATCCATGGTGGAATCCGGCTGTAGAAGAACAAGCAGTCATGCGCATCCATCGTATTGGACAAACAAAGAAGGTAGCCATTAAACGGTTTATTGTGAAGGGGACAGTAGAAGAGAGAATGGAGGCGGTGCAAGCACGGAAACAACGAATGATTTCTGGTGCCCTGACCGATCAAGAGGTTCGAAATGCACGGATTGAGGAGCTTAAGATGCTTTTCACTTAG 1551 0.4275 MKKKNALTSGGNLIICPMTLLGQWKAEIETHVQPGSLSLYVHYGQSRPKDAKSLSQNDVVITTYGVLASEFSSENTEDNGGLFSIRWFRVVLDEAHTIKSSKSQISIAAAALIADNRWCLTGTPIQNNLEDIYSLLRFLRIEPWGHWAWWNKLVQKPFEGGDARGLKLVQSILKPIMLRRTKYSTDREGKPILVLPPADMQVIYCEQTEAEKDFYEALFKRSKVRFDHRGDTQEFADLNKLAKRFLRGTHNTSEGEVNDAPSLAYVQEVVEELRKGDQGECPICLEAFEDAVLTPCAHRLCRECLLASWRNSASGLCPVCRKTVSRQDLITAPTDSRFQIDIEKNWVESCKVTLLLHELESLRSSGSKSIVFSQWTAFLDILQIPFARNNISFVRLDGTLNQQQREKVIKQFSEDDEILVLLMSLKAGGVGINLTAASNAFVMDPWWNPAVEEQAVMRIHRIGQTKKVAIKRFIVKGTVEERMEAVQARKQRMISGALTDQEVRNARIEELKMLFT 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60496g00017 516 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 351 516 IPR001650 -
Stsc60496g00017 516 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 86 503 IPR027417 -
Stsc60496g00017 516 CDD DEXDc_SHPRH-like 9 180 - -
Stsc60496g00017 516 Pfam Helicase conserved C-terminal domain 353 463 IPR001650 -
Stsc60496g00017 516 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 267 332 IPR013083 -
Stsc60496g00017 516 Pfam SNF2-related domain 8 230 IPR000330 GO:0005524|GO:0140658
Stsc60496g00017 516 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 8 516 - -
Stsc60496g00017 516 Gene3D - 1 181 IPR038718 -
Stsc60496g00017 516 SMART helicmild6 380 463 IPR001650 -
Stsc60496g00017 516 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 180 IPR027417 -
Stsc60496g00017 516 ProSitePatterns Zinc finger RING-type signature. 296 305 IPR017907 -
Stsc60496g00017 516 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 142 IPR014001 -
Stsc60496g00017 516 Gene3D - 196 516 IPR027417 -
Stsc60496g00017 516 ProSiteProfiles Zinc finger RING-type profile. 281 321 IPR001841 -
Stsc60496g00017 516 CDD SF2_C_SNF 347 474 - -
Stsc60496g00017 516 SUPERFAMILY RING/U-box 270 327 - -
Stsc60496g00017 516 SMART ring_2 281 320 IPR001841 -
Stsc60496g00017 516 Pfam Zinc finger, C3HC4 type (RING finger) 278 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60496g00017 Stsc-Chr60496 112680 117942 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60496g00017 1 516 RAD5 or RAD16-like Gene Family AT5G22750 77.778 0.0 891
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Stsc60496g00017 SNF2_N 8.4e-59 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60496g00017 K15505 - gmx:100794558 917.916