Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60496g00010 ATGGTTTTTGAATTCCTTGGGGACAATCTTCTTACTCTCATCAAGTATAGTGATTATCGAGGAGTTCCCATTCCCTTAGTTAAGGAAATTTGCTTCCATATTTTGGTGGGTTTGGATTACTTGCATCGTGAACTTTCTATAATACACACTGATTTGAAGCCAGAGAATGTCTTGCTTCTGTCACCACTGGATCCATCTAAGGATCCTAGGAAATCAGGCATTCCACTTGTTGCTCCAAATACCAAGGAGAAGATCAGCAATGGGACCACAAAAGATGAAAAAAATTTGCATGGAGATTTGACCAAGAACCAGAAAAAGAAAATGCGGAAAAAAGCTAAAAAGGCAGCTCAAGCTTGTGCTGGGACGGAAAGTCCCGAGGAAGCTGAGGAGGATGCTAAAACACCTGAGCAAAATGAATGTAGTAAAGATGTGGAACCAAGTTTAGAATCTGGTGAAGGCAACAGTTCTGTGGGAAAAGATGAATCGACAACGTCTTCTGAAACCAAGGATGATCCCCAAGGAAGTCGTGGTCAGAAGAAAGGTAGCCGCTCCGAAAGAAAGAAGTTACTTGCCTCTGCTGATCTTAAGTGCAAGCTGGTTGATTTTGGTAATGCGTGTTGGACTTATAAACAATTTACATCCGATATTCAGACGAGGCAGTATAGATGTCCTGAAGTTATTCTTGGATCAAAATACTCAACTCCAGCAGATCTATGGTCTTTTGCTTGCATTTGCTTTGAGCTTGCAACTGGCGATGTTCTTTTTGATCCTCACAGTGGTGACAACTATGACAGGGATGAGGATCATTTGGCTTTGATGATGGAGCTTCTTGGAATGATGCCCCGCAAGATTGCATTAGGTGGCCGCTATTCGCGCGAGTTTTTCAATAGATATGGTGATTTGAGGCACATCCGCCAGTTGCGGTTCTGGCCTCTTAACAAAGTACTGATGGAGAAATATGATTTCAGCGAGCAAGATGCAAATGACATGGCTGGCTTCATTATTCCATTACTTGATTTTGTCCCTGACAAGAGGCCAACAGCGGCTCAGTGCCTTACTCATCCATGGTTGAGTGCCGGACCTCGAACTCTCAAGCCTTCGTCAACTACTGTGCAACCGGCGGTGGAAGATGAAGAAACATTGGAAAAGGCGAAGGAAAAGGATGAGAGGGAAGCTGTGGAAGCTGGCATTGGGAATATGGCTATAGATGAAACTCCAAAGCCAGTTGAGGAGTCCCAAACTATACAACAGTCGTCAAAATAA 1263 0.4355 MVFEFLGDNLLTLIKYSDYRGVPIPLVKEICFHILVGLDYLHRELSIIHTDLKPENVLLLSPLDPSKDPRKSGIPLVAPNTKEKISNGTTKDEKNLHGDLTKNQKKKMRKKAKKAAQACAGTESPEEAEEDAKTPEQNECSKDVEPSLESGEGNSSVGKDESTTSSETKDDPQGSRGQKKGSRSERKKLLASADLKCKLVDFGNACWTYKQFTSDIQTRQYRCPEVILGSKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIALGGRYSREFFNRYGDLRHIRQLRFWPLNKVLMEKYDFSEQDANDMAGFIIPLLDFVPDKRPTAAQCLTHPWLSAGPRTLKPSSTTVQPAVEDEETLEKAKEKDEREAVEAGIGNMAIDETPKPVEESQTIQQSSK 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60496g00010 420 ProSiteProfiles Protein kinase domain profile. 1 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60496g00010 420 SMART serkin_6 1 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60496g00010 420 Gene3D Transferase(Phosphotransferase) domain 1 6 64 - -
Stsc60496g00010 420 Gene3D Transferase(Phosphotransferase) domain 1 177 357 - -
Stsc60496g00010 420 Pfam Protein kinase domain 190 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60496g00010 420 MobiDBLite consensus disorder prediction 163 186 - -
Stsc60496g00010 420 PANTHER PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED 1 379 - -
Stsc60496g00010 420 FunFam Serine/threonine-protein kinase SRPK-like protein 187 357 - -
Stsc60496g00010 420 SUPERFAMILY Protein kinase-like (PK-like) 1 370 IPR011009 -
Stsc60496g00010 420 MobiDBLite consensus disorder prediction 86 102 - -
Stsc60496g00010 420 MobiDBLite consensus disorder prediction 63 186 - -
Stsc60496g00010 420 MobiDBLite consensus disorder prediction 148 162 - -
Stsc60496g00010 420 MobiDBLite consensus disorder prediction 376 394 - -
Stsc60496g00010 420 ProSitePatterns Serine/Threonine protein kinases active-site signature. 47 59 IPR008271 GO:0004672|GO:0006468
Stsc60496g00010 420 MobiDBLite consensus disorder prediction 362 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60496g00010 Stsc-Chr60496 60848 63270 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60496g00010 1 403 EF-hand Containing Proteins AT5G22840 65.375 0.0 513
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Stsc60496g00010 Pkinase 3.4e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60496g00010 K08832 - gmx:100809984 649.818