Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60495g00010 ATGACTCCGGAAGAATTAGATGCTTTGTTAGAGATGGACATGGAGACGATCATAGAGCTGTCTAAAGACGATCAACCACCTCTGCTTCAATCTCAGCCTCTAGCTCTGCCTTTGCCTTCCCCTCAGCCGGCCTGGACTTGGGATGAGAACGAGTTCTTTGATACAGATATGGAGAATATAATGCAGCTGTCTGAAGTCGATGAACCACCTCAGCCTCAGCCTCCGGCTCCGGCTACGCCTCAGCCGGCCTGTACTTGGGATAAGAAAGAGTTCTTTGATACACATATGGAGAATCTAATGCAGCTGTGTGAAGTCGATGAACCACCTCAGCCTCAAACTCCGGCTCCGGCTCCGCCTCAGCCGGCCTGTACTTGGGATAATAAAGAGTTCTTTGATATAGATACGGAGAAGATGATAGAGCTTTTTAATATTAACACCGATGAACCTCCTCAGCCCGGGTCTCGGTCTGAGCCTCAGCCTCATCCTCAGCCCCATCTTCAATTGCAGCCTCAACATCGGGCTCTACCTCTACCTTCTTCTCCGCCGCCGGCGGTGTGGACTTGCGAAGAGAAAAAGATTTTTGAGATGATTGTTGCTGAATCTTTTTCAGAAGCCCTAAAGAACAGGTGGGAGGCGGTGGCTGCTCGTTTCCCCGGGAAGACCCCTGCCCAGCTACAACATCACTTCCAAGAGCTGCTGAATGACGTCAATCTCATCAGAGACGGTTGTGCATGGCCTCCACAGATGGCAAAAGACATCACATTCCAACACAACCCTCTTTCCATCCCCATCATCAATCATCAACAACACATGACTACGGTCACAGCGGCGGCACCACCGGAGATTATGTTACCATCGTCAGCCATGGCGGCAGCAGAAAGGGAACAAAACCAACCTGCCAACAACAACAGAATTGAACACAGACCTTTACCTAGGGCTACTGGCAAGAAGAATGAAAGAAAAGTAGAGCATTGGACTAAAGAAGAGCATCGGTTGTTTCTTGAAGGACTTAATAAGTATGGAAGATCAAAGTGGAAAGAGATTTCAAGATTTTATGTTAGAACAAAAAATCCCATGCAAGTTGCTACTCATGCTCAAAAATACTATAAGCATCAGGAGAAGAAAGAAAAAGGAGAAAATCTAAGAAAAAGCATCCATGACAACTGA 1167 0.4722 MTPEELDALLEMDMETIIELSKDDQPPLLQSQPLALPLPSPQPAWTWDENEFFDTDMENIMQLSEVDEPPQPQPPAPATPQPACTWDKKEFFDTHMENLMQLCEVDEPPQPQTPAPAPPQPACTWDNKEFFDIDTEKMIELFNINTDEPPQPGSRSEPQPHPQPHLQLQPQHRALPLPSSPPPAVWTCEEKKIFEMIVAESFSEALKNRWEAVAARFPGKTPAQLQHHFQELLNDVNLIRDGCAWPPQMAKDITFQHNPLSIPIINHQQHMTTVTAAAPPEIMLPSSAMAAAEREQNQPANNNRIEHRPLPRATGKKNERKVEHWTKEEHRLFLEGLNKYGRSKWKEISRFYVRTKNPMQVATHAQKYYKHQEKKEKGENLRKSIHDN 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60495g00010 388 Pfam Myb-like DNA-binding domain 324 368 IPR001005 -
Stsc60495g00010 388 Pfam Myb-like DNA-binding domain 186 233 IPR001005 -
Stsc60495g00010 388 ProSiteProfiles Myb-like domain profile. 317 369 IPR001005 -
Stsc60495g00010 388 ProSiteProfiles Myb-like domain profile. 186 233 IPR001005 -
Stsc60495g00010 388 MobiDBLite consensus disorder prediction 65 84 - -
Stsc60495g00010 388 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 185 387 IPR043363 -
Stsc60495g00010 388 SUPERFAMILY Homeodomain-like 185 240 IPR009057 -
Stsc60495g00010 388 ProSiteProfiles SANT domain profile. 325 373 IPR017884 -
Stsc60495g00010 388 SMART sant 182 235 IPR001005 -
Stsc60495g00010 388 SMART sant 321 371 IPR001005 -
Stsc60495g00010 388 MobiDBLite consensus disorder prediction 22 43 - -
Stsc60495g00010 388 Gene3D - 323 374 - -
Stsc60495g00010 388 MobiDBLite consensus disorder prediction 144 167 - -
Stsc60495g00010 388 MobiDBLite consensus disorder prediction 106 125 - -
Stsc60495g00010 388 MobiDBLite consensus disorder prediction 309 323 - -
Stsc60495g00010 388 NCBIfam myb-like DNA-binding domain, SHAQKYF class 323 372 IPR006447 GO:0003677
Stsc60495g00010 388 CDD SANT 186 233 IPR001005 -
Stsc60495g00010 388 CDD SANT 325 368 IPR001005 -
Stsc60495g00010 388 Gene3D - 183 244 - -
Stsc60495g00010 388 MobiDBLite consensus disorder prediction 368 388 - -
Stsc60495g00010 388 SUPERFAMILY Homeodomain-like 320 374 IPR009057 -
Stsc60495g00010 388 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 317 373 IPR017930 -
Stsc60495g00010 388 MobiDBLite consensus disorder prediction 293 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60495g00010 Stsc-Chr60495 117729 119217 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc60495g00010 Myb_DNA-binding 2.2e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60495g00010 - - ahf:112773219 151.754