Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60495g00007 ATGGATGTAAGAACAGTTTTCTCCGATGCCAGCACCAGCAGCGGCGTCTTCTGCGCCACCAACATGCCCTACAACAACCCCCATCATCATCATCACTACTATCCAACTTCTTCCTCAAACCCTCATCCACCTTCTTCTCCTGATGATGATGATGATGTCACACCTCTCAGGCTTCTCTCCGACAGCCTCGCCTCCCTATTTGACTCCGAATTTGACTTCTATGCCGACGCCAGGATAGTTCTGGCGGACGGGAGGGAGTTGGCGGTGCACCGGTGTATCCTGGCGGCGAGAAGCAGGTTCTTCAGAAGCTTGTTTGCGAAGGGCGGGGAAGAGAGCAAGAAGGTGATGATGAAGGAGGTGGCGAAGGAGTACGAGGTTGGAGGGGAGGCAGTTGGTGCGGTGGTTGGGTACTTGTACAGTGGGAGAGTGACGGCGATGGAGATTCCGAGCGGGATGTGCGTGTGCGTGGACGACGAATGCCCACACTTTGGGTGTAGGCCTGCTGTTGATTTCATGGTTCAGGTTCTCTACGCTTCCTTCGTCTTCCAGATTCACGACTTGGTTGCTCTCTATCAGACACATCTACTAGAGATTCTAGACAAGGTAGCAATTGATGACATTCTTGTGGTCCTTTCTGTTGCAAATATATGTGGCAAGATGTGTGAGAGGCTTCTTGCAAGGTGCATTGATCTCGTTATCAAGTCGGATGCTGACAGCACCACCGTCGAGAAGACGCTGCCGGAACCGGTGGCGAAACTCATTGCGGACAAGCGCCTAGAACTGGGCTTCCAACGGCCCCAACGCCTCTGTTTGCCGGATAAACATGTCAAGAGGATACACAGGGCACTGGATTCTGATGATGTGGAATTGGTTAGGATGCTGTTGAAAGAAGGTCACACGAATCTTGACGAGGCATGCGCACTTCACTACGCCGTGGCATACTGCGACGCAAAGACTACAACAGAGCTTCTTGATCTTGGTCTAGCAGATGTGAATCACAAGAACCTTAGGGGTTACAGCGTCCTTCATGTGGCGGCTATGAGGAAAGAGCCCAAAATCATAGTTTCCCTATTAACGAAGGGTGCTCATCCTTCTGATCTTACCTTGGATGGAAGAAAAGCCCTTCAGATTTCGAAGCGGCTCACGAAAGCCGTGGACTATTACAAGTCCACGGAGGAAGGCAAGGTTTCATCGAAGGACCGTTTGTGCATTGAGATATTGGAGCAGGCTGAGAGAAGGGATCCTCTGCTTGGAGAGGCATCGCTTTCACTAGCCATGGCCGGAGATGATTTGCGTATGAAGTTGTTGTACCTGGAAAACAGAGTTGGATTGGCGAAAGTGTTGTTTCCAATGGAAGCAAAGGTTGTGATGGATATAGCTCAAGTTGATGGAACATCTGAATTTCAACCACAAGACATCTACCCTCAAAACATGCGCGGTAGCACCGTGGACTTGAACGAGGCACCTTTCAAAATGAAAGAGGAACACTTAGCCAGGATGAAAGCACTCTCTAGAACTGTGGAACTAGGGAAACGGTTCTTCCCTCGATGCTCGGCCGTGCTGAACAAGATAATGGATGCGGATGACCTGACTCAGCTAGCTTGCATGAACAATGACAGCCCCGAAGAACGGCAAGCAAAGCGTAGAAGGTACATGGAGCTCCAAGAGATTCTAAGTAAGGCCTTCAATGAGGACAAAGAGGAGTTTGATAAGTCTGCCATTTCTTCATCTTCTTCTTCCACTTCTGTAGGAGTTATCAGGCCTAATGGCAAACTACCCATCAGGAAATAG 1791 0.4986 MDVRTVFSDASTSSGVFCATNMPYNNPHHHHHYYPTSSSNPHPPSSPDDDDDVTPLRLLSDSLASLFDSEFDFYADARIVLADGRELAVHRCILAARSRFFRSLFAKGGEESKKVMMKEVAKEYEVGGEAVGAVVGYLYSGRVTAMEIPSGMCVCVDDECPHFGCRPAVDFMVQVLYASFVFQIHDLVALYQTHLLEILDKVAIDDILVVLSVANICGKMCERLLARCIDLVIKSDADSTTVEKTLPEPVAKLIADKRLELGFQRPQRLCLPDKHVKRIHRALDSDDVELVRMLLKEGHTNLDEACALHYAVAYCDAKTTTELLDLGLADVNHKNLRGYSVLHVAAMRKEPKIIVSLLTKGAHPSDLTLDGRKALQISKRLTKAVDYYKSTEEGKVSSKDRLCIEILEQAERRDPLLGEASLSLAMAGDDLRMKLLYLENRVGLAKVLFPMEAKVVMDIAQVDGTSEFQPQDIYPQNMRGSTVDLNEAPFKMKEEHLARMKALSRTVELGKRFFPRCSAVLNKIMDADDLTQLACMNNDSPEERQAKRRRYMELQEILSKAFNEDKEEFDKSAISSSSSSTSVGVIRPNGKLPIRK 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60495g00007 596 PANTHER REGULATORY PROTEIN NPR3 48 583 IPR044292 GO:0009862|GO:2000022|GO:2000031
Stsc60495g00007 596 Pfam BTB/POZ domain 67 195 IPR000210 GO:0005515
Stsc60495g00007 596 MobiDBLite consensus disorder prediction 569 596 - -
Stsc60495g00007 596 Pfam NPR1/NIM1 like defence protein C terminal 379 581 IPR021094 -
Stsc60495g00007 596 Gene3D - 251 465 IPR036770 -
Stsc60495g00007 596 SUPERFAMILY Ankyrin repeat 278 379 IPR036770 -
Stsc60495g00007 596 ProSiteProfiles BTB domain profile. 75 147 IPR000210 GO:0005515
Stsc60495g00007 596 SUPERFAMILY POZ domain 62 196 IPR011333 -
Stsc60495g00007 596 SMART BTB_4 75 199 IPR000210 GO:0005515
Stsc60495g00007 596 CDD BTB_POZ_NPR_plant 57 199 - -
Stsc60495g00007 596 FunFam BTB/POZ domain and ankyrin repeat-containing protein NPR1 248 401 - -
Stsc60495g00007 596 SMART ANK_2a 337 366 IPR002110 GO:0005515
Stsc60495g00007 596 SMART ANK_2a 303 333 IPR002110 GO:0005515
Stsc60495g00007 596 SMART ANK_2a 274 302 IPR002110 GO:0005515
Stsc60495g00007 596 MobiDBLite consensus disorder prediction 29 53 - -
Stsc60495g00007 596 Gene3D Potassium Channel Kv1.1; Chain A 52 233 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60495g00007 Stsc-Chr60495 88092 91902 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Stsc60495g00007 NPR1_like_C 4.7e-92 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60495g00007 K14508 - gmx:100800032 769.615