Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60495g00006 ATGGATTTGTTTTCACTAGCAACTTCAATTACCCTACTTCGTTTTCTTCTTCCCCTTTTCTTTTGCATCAGTGTTTCTTCAGCGCAGGATTGTATTAACAATCAAATCTCACGTACTATCATAGTTGATCGATCTGGGAGGAACTCAAAATTCAAAACTGTTCAATCCGCAATTGATTCGATACCTGAAAACAATAATAAATGGGTGAAAATTCACATCAATGCTGGCACCTACGAAGAGAAGGTTAATATTCCTTGTGAGAAACCATGCATTTTTCTGGAAGGAGAAGGCATAGATGTTACTACAATTACATACAATGATCACCAACAAATGGATGAGAGTGCCACATTCTCTTCTTACCCAGACAATGTGGTTGCAAGTAGCATTACTTTTAAGAACTCGTTCGATGTGGGGAAAGTGATGAATCTGGAAGAAGTAAAGAATGGAAATATACAAGTGCCAGCATTGTCAGCAAGAATATATGGAGACAAATCTGGGTTTTATAATTGTAAATTTGTCGGATATCAAGATACTTTATGGGATGTCCAAGGTCGTCATTATTTCAAAAATTGCAATATCGAAGGAGCCGTAGATTTTATATCTGGCAATGGACAGTCTTATTTCGAGGATTGCGTAATAAATACGACGTCGTCAGGGTTCATAACGGCCCAAGGGCGGCAATCGGATGATGAGACGAGTGGTTTTGTGTTCAAAGGTGGCTACGTGGTTGGTTCGAGGGGTGCTTCATCTTTGTTGGGACGAGCCTATGGTCCCTATTCTCGAGTTATCTTTATTCAATCTAATTTCGATTCTGTGGTTAGCCCTATGGGTTGGGATTCCTGGCATTTTGCAACACACGAGGATAAATTCACGTATGCGGAATTTAACTGTAAGGGAGTAGGGGCAAATCCGTCCAAGCGTGTCCCTTGGATGAAGAAGTTAGATGCCGCACAGCTTAATCAATTTTCAAGATCGTCCTTCGTTGACCAAGATAATTGGATTTCAACAAACAAAGCTTTTATGAAAATCATTGAGTGA 1038 0.3979 MDLFSLATSITLLRFLLPLFFCISVSSAQDCINNQISRTIIVDRSGRNSKFKTVQSAIDSIPENNNKWVKIHINAGTYEEKVNIPCEKPCIFLEGEGIDVTTITYNDHQQMDESATFSSYPDNVVASSITFKNSFDVGKVMNLEEVKNGNIQVPALSARIYGDKSGFYNCKFVGYQDTLWDVQGRHYFKNCNIEGAVDFISGNGQSYFEDCVINTTSSGFITAQGRQSDDETSGFVFKGGYVVGSRGASSLLGRAYGPYSRVIFIQSNFDSVVSPMGWDSWHFATHEDKFTYAEFNCKGVGANPSKRVPWMKKLDAAQLNQFSRSSFVDQDNWISTNKAFMKIIE 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60495g00006 345 ProSitePatterns Pectinesterase signature 2. 193 202 IPR033131 -
Stsc60495g00006 345 Gene3D - 33 342 IPR012334 -
Stsc60495g00006 345 SUPERFAMILY Pectin lyase-like 36 335 IPR011050 -
Stsc60495g00006 345 Pfam Pectinesterase 42 330 IPR000070 GO:0030599|GO:0042545
Stsc60495g00006 345 FunFam Pectinesterase 34 338 - -
Stsc60495g00006 345 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 34 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60495g00006 Stsc-Chr60495 81090 86442 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60495g00006 19 287 Carbohydrate Esterase AT2G19150 43.885 1.40e-69 217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60495g00006 - - aip:107633881 456.832