Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60495g00001 ATGGACGGTGTGTTCTTCCTGTCAGAAGCAGCCAGAGCCAGTTACCTGCGCTCTACAGCGCAGTCTTTTGGCTGTGCCTACATTTGCCTCTGGTCCTTTGATCCCACTTCTTCTCCTAATAATAATCGGTTGTTCTTCTTGGATGGTTTCTACAACCAAGCAAGCTCTTCTTTGGGGAGTGTGGCGCAACACCTCTTTAATCAGTTCAGGACTTTAACATTTCATGCCAATGATGACGGTATTCCTGGACTAGCTTTTAGGAACAACCGTCCCTACCTAGAGCTGCAGCAACCACAACTTGTCACACTCGCATGGACTCAAATGCAAAAGCAATTTTACCAGGAAGCAAGGATTAAGACTGCTGTATTCATGGGGTGCAACAAAGGGGAAATTGAGCTTGGTTTCTTAAACATGTCTCAAGCCGAAATTCAAACAGCACTTAGCAATTTGTTCCCAGAAGATTTCTCATCTACTGCTGCTTTGCGGCAAATAGTGGATCATCAGAACAATCCAGCAACATCATCTTCATCTTCTTTGAGATCACTATCCACAACAGCAGGGAGCCCTGAATACTCCTCTCTCATATTCAACGTTCCTCCTACAGCGGCAGCGGCGGCGGCGCCAGGAACAATAGCACCTAACACGATTTCGCCTTTGTCATCGAACACAGCATCAGCATTGCTAAGTCATCCATCAACAACAACTCCTCATTTCATGTTCCCAAATCAGGAGATCGAAAACGAGACACTGATGAGAGTGTTCTTGAACGCTATATCATCGCCTCAACAGCTTCAGAATCAAAACTTGCCTTATAACATCACGGTGGCGCACCCTGAGAGTGGCGCTTTCAGGCGGTACAGGACGGAACCGGAGGCAGGAACCAACGGGTCGTCGGTTAGTTTGCGGAGTAGGCAAAGCCTTATGAAGAGAACGTTAGCATTCTTTAGAAGAATCAATGAGATGAGAATAAGGGAACGGATTCAAGCCAGCCGACCATCAAGTACGCAGCTTCATCATATGATTGCTGAGAGAAGACGACGAGAGAAGCTCAACGATAACTTTCAGGCGCTTAGAGAATTGCTTCCTCATGGAACTAAGAAAGACAAAGCGTCTATACTAACAACTGCAAAGGAGACACTGAGTTCATTGATGGCTGAAATTGAAAAGCTAAGGATAAGAAACCAGGAGCTTGAATCACGTTTGCCTGAGAGCAAAGAATCAACCACTACTACTACCGATCAAGAAATTTGCAAAACTATGTTAATGGTGCCACCAAATGAGAGATTTCATGTCCAAATTTCAGATGTGCCACAATCATCATCAGAAGAAGAGAGGAGGATGGATTTGCATGTCGCATTGAGGGGTCAAATTTCTCATATTGATGTGGTGATTCGGTTATTGGAGTTCTTGAATGTGGCTCAGAATGTGAGCTTGGTTAGCATGAGAACAAATACCAATAACAATGTTGAAGGGAATAATTCTATTAATCAACTAACATTCAGATTAAGGATTCTTCAGGGAAGTGAATGGGATGTTTCTGCCTTCCAAGAAGCAGTGAGAAGAGTTGTTGGTGAGTTGGTACAGTTCCAATAA 1593 0.4419 MDGVFFLSEAARASYLRSTAQSFGCAYICLWSFDPTSSPNNNRLFFLDGFYNQASSSLGSVAQHLFNQFRTLTFHANDDGIPGLAFRNNRPYLELQQPQLVTLAWTQMQKQFYQEARIKTAVFMGCNKGEIELGFLNMSQAEIQTALSNLFPEDFSSTAALRQIVDHQNNPATSSSSSLRSLSTTAGSPEYSSLIFNVPPTAAAAAAPGTIAPNTISPLSSNTASALLSHPSTTTPHFMFPNQEIENETLMRVFLNAISSPQQLQNQNLPYNITVAHPESGAFRRYRTEPEAGTNGSSVSLRSRQSLMKRTLAFFRRINEMRIRERIQASRPSSTQLHHMIAERRRREKLNDNFQALRELLPHGTKKDKASILTTAKETLSSLMAEIEKLRIRNQELESRLPESKESTTTTTDQEICKTMLMVPPNERFHVQISDVPQSSSEEERRMDLHVALRGQISHIDVVIRLLEFLNVAQNVSLVSMRTNTNNNVEGNNSINQLTFRLRILQGSEWDVSAFQEAVRRVVGELVQFQ 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60495g00001 530 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 331 402 IPR036638 GO:0046983
Stsc60495g00001 530 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 334 383 IPR011598 GO:0046983
Stsc60495g00001 530 Pfam Helix-loop-helix DNA-binding domain 338 383 IPR011598 GO:0046983
Stsc60495g00001 530 Gene3D - 333 408 IPR036638 GO:0046983
Stsc60495g00001 530 CDD bHLH_AtbHLH_like 339 391 IPR045239 -
Stsc60495g00001 530 Coils Coil 340 360 - -
Stsc60495g00001 530 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 106 523 IPR044658 -
Stsc60495g00001 530 SMART finulus 340 389 IPR011598 GO:0046983
Stsc60495g00001 530 Coils Coil 373 407 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60495g00001 Stsc-Chr60495 46701 51186 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60495g00001 1 528 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 38.819 2.50e-96 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc60495g00001 HLH 4.8e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60495g00001 - - ahf:112790359 761.911