Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60493g00008 ATGATCCCAAAGGTGGAAGTACTTGTAGCCTCGGGCAGGAATGTTACTGTTGTTAGCAAGCTACCACCCAAGTCGATGGAAGAGATGCCTCCTGTAGAAACTGTGGGCTTGGACTTGATGGTTGACAAAGTTTGGAAATGTCTTCAAGACGAAAATGTGGGCATCATTGGCTTGTTTGGTATGGGTGGGGCTGGAAAAACCACTCTTATGAAAAAGGTTCACAATGAATTTGGTAAAAGGGAGCATAAATTTGATTTAATATTGTGGGTGGTGGTCTCTAAAGATTGCAATGTTGACAACATTATGAATGCGATTCGCAGCAGGTTAGGGATTAAAGATGATGATTGGAACAGAAGCAGTGAAGATCAAAAAAGGGCAAAGATCTACCAAATCCTAAAAGGTAAGAGATTTGTGTTGATGTTAGATGATGTTTGGGGAAAGTTGGAAATTGGAAGCATAGGAGTACCATCTCCGAAAGATAATAACTATGAGTCTAAAGTTGTGTTCACAACCCGGCTTCAAGATGTGTGTGCCAAAATGCAAGCAGATGCAAAACTCAAAGTGGAATGTCTACATGAAAATGAGGCGTTCGAGTTGTTCTGCAAACATGTCGGTAAAGAGACTTTAAACTCCCATCCAAAAATTGGAGAGCTTGCAGGAGAGATTGTTAAAGAGTGTGGAGGACTTCCTCTGGCACTTATTACGGTGGGGAGTGCTATGGCTGGAGTGAATGATGTTGGAGCATGGCAGCAGGCTATTGATGATTTAGGGGCTTCTCCTTGGACAGGTCCTGATTTGGAAAGTAAAGTGTTCAGCATTCTCAAATTTAGTTATGATAGACTGCCAGATGAAACACATAAAAATTGTTTCTTGTATTGCTCGCTATATCCAGAAGATTATAGGATTGATGTTGAAGGGCTAATCGACAGATGGATTGGAGAGGGATTTCTTGGGAAAGGCAAATATCAGAGTAAGAAAGGCATATTTGAAATGCATGAAGAAGGGCAATCTATCATTGAAAAATTAAAGCTTTCATGTCTCATAGAGGATGCTACAGATTGGGATGGAGGAGGTAATATGATTAAGATGCATGATGTGATTCGAGATATGGCACTGTGGTTGTGGCGTGATGAAGATAAGAATAAAGAAAATGTTGTAGTTGAGAATGAAGCATTTGTAAGCATGGGACCTGAAAAATTGAATATTGTGGAGAGGATCTCGGTCATACAGGCACGTCTTGCAGAAACGCGAATGATACCAACTTGTCCAAATCTCTTGTCCCTCCGTATCAGAAATCGGATGGACGGACTTGTAATGCACGACAAGATTGAAAGTGTTGGATCTATCAGAAAACCTGGATCTTGA 1365 0.4088 MIPKVEVLVASGRNVTVVSKLPPKSMEEMPPVETVGLDLMVDKVWKCLQDENVGIIGLFGMGGAGKTTLMKKVHNEFGKREHKFDLILWVVVSKDCNVDNIMNAIRSRLGIKDDDWNRSSEDQKRAKIYQILKGKRFVLMLDDVWGKLEIGSIGVPSPKDNNYESKVVFTTRLQDVCAKMQADAKLKVECLHENEAFELFCKHVGKETLNSHPKIGELAGEIVKECGGLPLALITVGSAMAGVNDVGAWQQAIDDLGASPWTGPDLESKVFSILKFSYDRLPDETHKNCFLYCSLYPEDYRIDVEGLIDRWIGEGFLGKGKYQSKKGIFEMHEEGQSIIEKLKLSCLIEDATDWDGGGNMIKMHDVIRDMALWLWRDEDKNKENVVVENEAFVSMGPEKLNIVERISVIQARLAETRMIPTCPNLLSLRIRNRMDGLVMHDKIESVGSIRKPGS 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60493g00008 454 Gene3D - 190 277 IPR042197 -
Stsc60493g00008 454 PRINTS Disease resistance protein signature 226 240 - -
Stsc60493g00008 454 PRINTS Disease resistance protein signature 55 70 - -
Stsc60493g00008 454 PRINTS Disease resistance protein signature 131 145 - -
Stsc60493g00008 454 FunFam Probable disease resistance protein At5g66910 190 277 - -
Stsc60493g00008 454 FunFam Probable disease resistance protein At1g63360 278 373 - -
Stsc60493g00008 454 Gene3D - 278 372 IPR036388 -
Stsc60493g00008 454 PANTHER DISEASE RESISTANCE PROTEIN RP 35 389 IPR044974 GO:0006952
Stsc60493g00008 454 Pfam NB-ARC domain 40 279 IPR002182 GO:0043531
Stsc60493g00008 454 Gene3D - 23 187 IPR027417 -
Stsc60493g00008 454 FunFam Probable disease resistance protein At1g61300 17 185 - -
Stsc60493g00008 454 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 21 293 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60493g00008 Stsc-Chr60493 60876 62240 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60493g00008 49 303 WRKY Transcription Factor Family AT5G45050 24.345 2.57e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60493g00008 - K13459 psat:127102790 499.59